View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_123 (Length: 227)
Name: NF1705_low_123
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_123 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 6804022 - 6803857
Alignment:
| Q |
10 |
ctgagatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaagttctactttcaaaatgtggggg |
109 |
Q |
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| T |
6804022 |
ctgatatgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgattcaggcaaagttctactttcaaaatgtggggg |
6803923 |
T |
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| Q |
110 |
ttttgtaggcaaaggtttttatagtaatggtttatttgttttagatgtttctaaagttatgaatga |
175 |
Q |
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| T |
6803922 |
ctttgtaggcaaaggtttctatagtaatggtttatttattttagatgtttctaaagttatgaatga |
6803857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 14059922 - 14060080
Alignment:
| Q |
15 |
atgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaagttctactttcaaaatgtgggggttttg |
114 |
Q |
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| T |
14059922 |
atgagttataatttggtgtctgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaagttttactttcaaaatgtgggggctttg |
14060021 |
T |
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| Q |
115 |
taggcaaaggtttttatagtaatggtttatttgttttagatgtttctaaagttatgaat |
173 |
Q |
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| T |
14060022 |
taggcaaaggattttatagtaatggtgtatttgtgttggatatctctacatttatgaat |
14060080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 6803727 - 6803686
Alignment:
| Q |
171 |
aatgataagtgtctaatatgtgtagaagctaaaagtacaaag |
212 |
Q |
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| T |
6803727 |
aatgataagtgttcaatatgtgtagaagctaaaattacaaag |
6803686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 26972702 - 26972544
Alignment:
| Q |
15 |
atgaattataatttagtgtctgtatctatattgagcaaagcgggcataaaaactaattttgatttagacaaagttctactttcaaaatgtgggggttttg |
114 |
Q |
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|||| ||||||||| |||| ||| |||||||||||||||||||| ||| | | |||||| | | |||||||| ||||||||||||||||||| |||| |
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| T |
26972702 |
atgagttataatttggtgtatgtgtctatattgagcaaagcgggtgtaacagtcacttttgaatcaaacaaagttttactttcaaaatgtgggggctttg |
26972603 |
T |
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| Q |
115 |
taggcaaaggtttttatagtaatggtttatttgttttagatgtttctaaagttatgaat |
173 |
Q |
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| T |
26972602 |
taggcaaaggattttatagtaacgatttatttgtgttggatatctctacatttatgaat |
26972544 |
T |
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