View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_124 (Length: 227)

Name: NF1705_low_124
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_124
NF1705_low_124
[»] chr7 (5 HSPs)
chr7 (1-225)||(5314510-5314734)
chr7 (1-227)||(5283868-5284094)
chr7 (1-225)||(5309693-5309920)
chr7 (1-225)||(5290035-5290259)
chr7 (1-225)||(5302056-5302280)
[»] chr5 (6 HSPs)
chr5 (5-176)||(1504363-1504534)
chr5 (5-178)||(1491599-1491772)
chr5 (5-177)||(1481709-1481881)
chr5 (5-201)||(1477598-1477794)
chr5 (29-182)||(1485469-1485624)
chr5 (5-177)||(1496809-1496981)
[»] chr1 (3 HSPs)
chr1 (1-179)||(44128173-44128351)
chr1 (1-179)||(44132378-44132556)
chr1 (1-179)||(44140800-44140978)
[»] chr2 (1 HSPs)
chr2 (2-179)||(24165436-24165613)
[»] chr3 (3 HSPs)
chr3 (62-175)||(37863716-37863829)
chr3 (119-175)||(37859726-37859782)
chr3 (119-175)||(39029635-39029691)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5314510 - 5314734
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5314510 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatat 5314609  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 200  Q
    || || |||||||||||||| ||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5314610 cctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 5314709  T
Q  201 tgatatacttgaatatataaatatt 225  Q
    |||||||||||| ||||||||||||    
T  5314710 tgatatacttgagtatataaatatt 5314734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5283868 - 5284094
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  5283868 tgtgtctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtat 5283967  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 200  Q
    || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5283968 cctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 5284067  T
Q  201 tgatatacttgaatatataaatattat 227  Q
    |||||||||||| ||||||||||||||    
T  5284068 tgatatacttgagtatataaatattat 5284094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5309693 - 5309920
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5309693 tgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatat 5309792  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctat---ttatta 197  Q
    || || |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||   ||||||    
T  5309793 cctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagtattcttctcctctatttattatta 5309892  T
Q  198 ttttgatatacttgaatatataaatatt 225  Q
    ||||||||||||||| |||| |||||||    
T  5309893 ttttgatatacttgagtataaaaatatt 5309920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5290259 - 5290035
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5290259 tgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttat 5290160  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 200  Q
    || || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290159 cctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 5290060  T
Q  201 tgatatacttgaatatataaatatt 225  Q
    ||||| |||||| |||| |||||||    
T  5290059 tgataaacttgagtataaaaatatt 5290035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5302056 - 5302280
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||    
T  5302056 tgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttat 5302155  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 200  Q
    || || |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5302156 cctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattattt 5302255  T
Q  201 tgatatacttgaatatataaatatt 225  Q
    ||||| |||||| |||| |||||||    
T  5302256 tgataaacttgagtataaaaatatt 5302280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 1504363 - 1504534
Alignment:
Q  5 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccgg 104  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |    
T  1504363 tctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaacaaagcacatatcctg 1504462  T
Q  105 acttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagt 176  Q
    | || ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  1504463 atttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 1504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 1491599 - 1491772
Alignment:
Q  5 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccgg 104  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |    
T  1491599 tctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctg 1491698  T
Q  105 acttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtat 178  Q
    | |||||||||||||||||||| || |||||||||||||| || ||||| |||||||| |||||||||||||||    
T  1491699 atttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgtgtaagtat 1491772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 1481709 - 1481881
Alignment:
Q  5 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccgg 104  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |    
T  1481709 tctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaacaaagcacatatcctg 1481808  T
Q  105 acttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagta 177  Q
    | |||||||||||||||||||||||||| || |||   ||||| ||||| |||||||| ||||||||||||||    
T  1481809 atttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgtgtaagta 1481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 1477598 - 1477794
Alignment:
Q  5 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccgg 104  Q
    ||||||||||| |||||||| || |||||||| ||||| |||||  |||||||||| |||||||||||||| || ||||||||||||||||| ||||| |    
T  1477598 tctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaacaaagcacatatcctg 1477697  T
Q  105 acttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattcttctcctctatttattatttt 201  Q
    | |||||||| ||||||||||||||||| ||||||  |||||| ||||| |||||||| ||||||||||||||||||| || ||||| | |||||||    
T  1477698 atttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagtattcttttcttctatcttttatttt 1477794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 1485469 - 1485624
Alignment:
Q  29 gcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccggact--tttactttaaaatcacaaa 126  Q
    |||||||| ||||||| ||| |||||||| || |||||||||||| |||||||||||||||||||||| ||||| || |  | ||||| | |||| ||||    
T  1485469 gcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgcaaa 1485568  T
Q  127 cagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtattctt 182  Q
     || || ||||| ||  |||| | |||||||||||||||||| |||||||||||||    
T  1485569 tagcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagtattctt 1485624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 1496809 - 1496981
Alignment:
Q  5 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatccgg 104  Q
    ||||||||||| | ||||||||| |||||||| ||| |||| || || || ||||| |||||||||||| |||||||| ||||||||||||| ||||| |    
T  1496809 tctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 1496908  T
Q  105 acttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagta 177  Q
    |  | || || | | ||||||||| ||| ||||| |||||| ||||| ||||||| |||||||| ||| ||||    
T  1496909 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 1496981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44128173 - 44128351
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    ||||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||    
T  44128173 tgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatat 44128272  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtatt 179  Q
    || || || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  44128273 cctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44128351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44132378 - 44132556
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    ||||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||    
T  44132378 tgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatat 44132477  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtatt 179  Q
    || || || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  44132478 cctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44132556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44140800 - 44140978
Alignment:
Q  1 tgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttat 100  Q
    ||||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||    
T  44140800 tgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatat 44140899  T
Q  101 ccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtatt 179  Q
    || || || ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  44140900 cctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagtatt 44140978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 24165613 - 24165436
Alignment:
Q  2 gtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacttatc 101  Q
    |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| |||||||||||| |||| ||||||||||||||||| ||||    
T  24165613 gtgtctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatc 24165514  T
Q  102 cggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaagtatt 179  Q
    | || || ||||||| | |||||||||| || ||||| |   |||| ||||| |||||||| ||||| ||||||||||    
T  24165513 ctgatttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagtatt 24165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 37863829 - 37863716
Alignment:
Q  62 actgcaaatccagcaaattgtgttgaacaaagcacttatccggacttttactttaaaatcacaaacagtgaacacaaaactgaactaaaagagaaatttc 161  Q
    |||||||||||   ||| |||||||| || || || ||||| |||||||||||    ||||||||||||||||||||||||||||| | ||| ||||| |    
T  37863829 actgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttccgtatcacaaacagtgaacacaaaactgaactcagagaaaaattcc 37863730  T
Q  162 agcgcatgtgtaag 175  Q
    ||||||||||||||    
T  37863729 agcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 37859782 - 37859726
Alignment:
Q  119 atcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaag 175  Q
    ||||||||||||||||| || ||||| || ||||| |||||||||||||||||||||    
T  37859782 atcacaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgtaag 37859726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 39029635 - 39029691
Alignment:
Q  119 atcacaaacagtgaacacaaaactgaactaaaagagaaatttcagcgcatgtgtaag 175  Q
    |||||||| ||||| ||||| || || || ||||| |||||||||||||||||||||    
T  39029635 atcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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