View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_125 (Length: 227)
Name: NF1705_low_125
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 43808568 - 43808370
Alignment:
| Q |
1 |
caaagttaaatatatacatttccatacatgctgcacttttactcttccgttccaaacttcaaatccctccagcatgcatagtctggccgcaacattcaaa |
100 |
Q |
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| T |
43808568 |
caaagttaaatatatacatttccatacatgctgcacttttactcttccgttccaaacttcaaatccctt--gca--cat-gtctggccgcaacattcaaa |
43808474 |
T |
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| Q |
101 |
ccctccttgcctacgattccctaactggtcctttaatcaacaaccctgagagcgagtttgatactgttctcaacaagctaagaatgaaatacagaacgta |
200 |
Q |
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| T |
43808473 |
ccctccttgcctacgattccctaaccggtcctttaatcaacaaccctgagagcgagtttgatactgttctcaacaagctaagaatgaaatacagaacgta |
43808374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 19469171 - 19469261
Alignment:
| Q |
91 |
aacattcaaaccctccttgcctacgattccctaactggtcctttaatcaacaaccctgagagcgagtttgatactgttctcaacaagctaa |
181 |
Q |
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| T |
19469171 |
aacattcaaaccctgcttgcctaccatttcctaactggtcctttgatcaacaactctgatttcgagtttgatgcggttcttaacaagctaa |
19469261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 37148208 - 37148012
Alignment:
| Q |
8 |
aaatatatacatttccatacatgctgcacttttactcttccgttccaaacttcaaatccctccagcatgcata-gtctggccgcaacattcaaaccctcc |
106 |
Q |
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| T |
37148208 |
aaatatatacatttccatacatgctgcacttttact-ttctgttctaaacttcaaatccctccagcttgaacatgtctggccgcaacattcaaaccctcc |
37148110 |
T |
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| Q |
107 |
ttgcctacgattccctaactggtcctttaatcaacaaccctgagagcgagtttgatactgttctcaacaagctaagaatgaaatacagaacgtacatt |
204 |
Q |
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| T |
37148109 |
ttgcctaccattccctaagtggtcctttaatcaacaaccatgagagcgagtttgatactgttctcaacaagagaagaatgaaatacagaacgtacatt |
37148012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 47866291 - 47866201
Alignment:
| Q |
91 |
aacattcaaaccctccttgcctacgattccctaactggtcctttaatcaacaaccctgagagcgagtttgatactgttctcaacaagctaa |
181 |
Q |
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| T |
47866291 |
aacattcaaaccctgcttgcctaccatttcctatctggtcctttgatcaacaactctgattccgagtttgatgcggttcttaacaggctaa |
47866201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 41579537 - 41579575
Alignment:
| Q |
4 |
agttaaatatatacatttccatacatgctgcacttttac |
42 |
Q |
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| T |
41579537 |
agttaaatatatacgtttccatacatgctgcacttttac |
41579575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 39357064 - 39357128
Alignment:
| Q |
81 |
gtctggccgcaacattcaaaccctccttgcctacgattccctaactggtcctttaatcaacaacc |
145 |
Q |
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| T |
39357064 |
gtctggccgtaacattcaaaccttgctgtcctaccattgcctaaatggtcctttgatcaacaacc |
39357128 |
T |
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