View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_134 (Length: 219)
Name: NF1705_low_134
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_134 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 29420875 - 29420685
Alignment:
| Q |
16 |
caaccaatataatcttgcttagtacaactcgatttcattcaagaccattttattttatcaatccaaacatagcctgatttaattttcacgagaacaagaa |
115 |
Q |
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| T |
29420875 |
caaccaatataatcttgcttagtacaactcgatttcattcaactccattctattttatcaatccaaacttagcctgatttaattttcacgagaacaagaa |
29420776 |
T |
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| Q |
116 |
agttcaacccatagtccattttcttccagcaagtgtgcatcaaattatcccttatctcctacctactcatcctcgttctaaagtagacaac |
206 |
Q |
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| T |
29420775 |
agttcaacccatagtccattttcttccagcaagtgtgcatcaaattatcccttatctcctacctactcatcctcgttctaaagcagacaac |
29420685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 29446034 - 29446133
Alignment:
| Q |
93 |
tttaattttcacgagaacaagaaagttcaacccatagtccattttcttccagcaagtgtgcatcaaattatcccttatctcctacctactcatcctcgtt |
192 |
Q |
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||||||||||| |||||||||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29446034 |
tttaattttcatgagaacaagaaagttcaatccatagcctgttttcttcaagcaaatgtgcatcaaattatcccttatctcctacctactcatcctcgtt |
29446133 |
T |
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