View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_138 (Length: 203)
Name: NF1705_low_138
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_138 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 1145629 - 1145496
Alignment:
| Q |
14 |
gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagacc--nnnnnnnntacaccagaagtctg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1145629 |
gaagaaacaaacaggccaaagttccatctttttatgatttcccaattgtgccctttcattgcatcataaaagaccaaaaaaaaaatacaccagaagtctg |
1145530 |
T |
|
| Q |
112 |
gaacgttgtgcatagctaacatgagagaatgaca |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
1145529 |
gaacgttgtgcatagctaacatgagagaatgaca |
1145496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 1145455 - 1145408
Alignment:
| Q |
141 |
tgacacaatcagttttggttttttatcaaatggatgataatcaatgtg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1145455 |
tgacacaatcagttttggttttttatcaaatggatgataatcaatgtg |
1145408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 27801560 - 27801597
Alignment:
| Q |
50 |
atttcccaattgtgccctttcattgcatcataaaagac |
87 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
27801560 |
attttccaattgtaccctttcattgcatcataaaagac |
27801597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 30725060 - 30725023
Alignment:
| Q |
50 |
atttcccaattgtgccctttcattgcatcataaaagac |
87 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30725060 |
attttccaattgtaccctttcattgcatcataaaagac |
30725023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University