View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_15 (Length: 467)
Name: NF1705_low_15
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 188 - 453
Target Start/End: Complemental strand, 29143712 - 29143447
Alignment:
| Q |
188 |
catagttcagaggtattctagctcatctaagaaaggtaagatgctatggaaaagtttccaaaacacagtcactttacattctgtctgtactaaacattca |
287 |
Q |
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| T |
29143712 |
catagtacaaaggtattctagctcatctaagaaaggtaagatgctatggaaaagtttccaaaacatagtcactttacatcctgtctgtactaaacatcca |
29143613 |
T |
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| Q |
288 |
ttccatcattggctttatactaaaacttatcataaatttatagagctatatttacacacacatgcactatatttcactgcatttatatgtcaacattaag |
387 |
Q |
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| T |
29143612 |
ttccatcattggctttatactaaaacttttcataaatttatagagctatatttacacacacatgcactatatttcactgcatttatatgtcaacattaag |
29143513 |
T |
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| Q |
388 |
cttagacacacaatgtcagcaacaattacctagaactcaacattccagtcccagcccttcaatatt |
453 |
Q |
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| T |
29143512 |
cttagacacacaatgtcagcaacaattacctagaactcaacattccagtcccagcccttcaatatt |
29143447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 29143887 - 29143808
Alignment:
| Q |
13 |
aatataataatccatcaaattatcatgatccaaaatagttttattatttctttagcctggcttggcaggattgatccatg |
92 |
Q |
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| T |
29143887 |
aatataataatccatcaaattatcatgatccaaaatagttttattatttctttagcctggtttggcaggattgatccatg |
29143808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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