View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_16 (Length: 463)
Name: NF1705_low_16
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 3798480 - 3798046
Alignment:
| Q |
18 |
aatacaattgatcttgttgtgaacattcaaagcattaacttcttctataagctttggaagtttagaaggcatggtgcttttaatagataaaataactttc |
117 |
Q |
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|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3798480 |
aatacaattgatcttgctctcaacattcaaagcattaacttcttctataagctttggaagtttagaaggcatggtgcttttaatagataaaataactttc |
3798381 |
T |
|
| Q |
118 |
tttatatcacttctatcatcttcaggttccaaaccatctgggagtgtcaccacttgtatcttgtcttgctcgaaaacaccggttttcgatcgtttatggt |
217 |
Q |
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| T |
3798380 |
tttatatcacttctatcatcttcagattccaaaccatctgggagtgtcatcacttgtatcttgtcttgctcgaaaacaccggttttcgatcgtttatggt |
3798281 |
T |
|
| Q |
218 |
taaactcggtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgcataagggggttaacatgtccttgaactggaaatggtat |
317 |
Q |
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| T |
3798280 |
taaactcagtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgcataagggggttaacatgtccttgaactggaaatggtat |
3798181 |
T |
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| Q |
318 |
aacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattattatgataagaattgcaaatatttttaggacagaagaat |
417 |
Q |
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| T |
3798180 |
aacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattattatgacaagaattgcaaatatttttaggacagaagaat |
3798081 |
T |
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| Q |
418 |
ggttcttggatgaaatatttgtactttgtattcat |
452 |
Q |
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| T |
3798080 |
ggttcttggatgaaatatttgtactttgtattcat |
3798046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 3790877 - 3791306
Alignment:
| Q |
18 |
aatacaattgatcttgttgtgaacattcaaagcattaacttcttctataagctttggaagtttagaaggcatggtgcttttaatagataaaataactttc |
117 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||| ||||||| |
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| T |
3790877 |
aatacaattgatcttgttgtcaacattcaaagcattaacttcttctataagttttggaagtctaggaggcatggtgcttttaattgataaaagaactttc |
3790976 |
T |
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| Q |
118 |
tttatatcacttctatcatcttcaggttccaaaccatctgggagtgtcaccacttgtatcttgtcttgctcgaaaacaccggttttcgatcgtttatggt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
3790977 |
tttatatcacttctatcatcttcaggttccaaaccatctggaagtgtcaccacttgtatcttgtcttgctcggaaacaccggttttcgatcgttcatggt |
3791076 |
T |
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| Q |
218 |
taaactcggtatgtagaaaagtgaccttgcaaccatgtttggctagaacttgtgagaattgcataagggggttaacatgtccttgaactggaaatggtat |
317 |
Q |
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| T |
3791077 |
taaactcagtatgtagaaaagtgactttgcaaccatggttggctagaatttgtgagaattgcataaggggattcacatgtccttgaactggatatggtat |
3791176 |
T |
|
| Q |
318 |
aacaagaaaatgaggcaatatactcatttgctttgttgctagctagaaaataattatattattatgataagaattgcaaatatttttaggacagaagaat |
417 |
Q |
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| T |
3791177 |
agcaagaaaatgaggcaatataaccatttgcttagtt----gctggaaaataattatattattgtgacaagaattgaaaata-ttttaggacagaagaac |
3791271 |
T |
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| Q |
418 |
ggttcttggatgaaatatttgtactttgtattcat |
452 |
Q |
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| T |
3791272 |
ggctcttgggtgaaatatttgtactttgtattcat |
3791306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 3770794 - 3770913
Alignment:
| Q |
45 |
caaagcattaacttcttctataagctttggaagtttagaaggcatggtgcttttaatagataaaataactttctttatatcacttctatcatcttcaggt |
144 |
Q |
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||||||||||||||||||||||||||| ||||| || ||||||| | ||||| || || || | |||||||||| |||||||||||||||||||||| |
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| T |
3770794 |
caaagcattaacttcttctataagcttaggaagcaaaggaggcatgtttcttttgattgagaagagaactttcttttgatcacttctatcatcttcaggt |
3770893 |
T |
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| Q |
145 |
tccaaaccatctgggagtgt |
164 |
Q |
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|||||||||||||||||||| |
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| T |
3770894 |
tccaaaccatctgggagtgt |
3770913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 3758969 - 3759063
Alignment:
| Q |
235 |
aaagtgaccttgcaaccatgtttggctagaacttgtgagaattgcataagggggttaacatgtccttgaactggaaatggtataacaagaaaatg |
329 |
Q |
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||||||| ||||| ||||||||||||| ||| || ||||||||||||||||| || | ||||||| ||| ||| |||||||| |||||||||| |
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| T |
3758969 |
aaagtgattttgcatccatgtttggctaaaacatgagagaattgcataaggggattcatatgtcctagaattgggaatggtattgcaagaaaatg |
3759063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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