View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_17 (Length: 458)

Name: NF1705_low_17
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_17
NF1705_low_17
[»] chr6 (9 HSPs)
chr6 (61-444)||(10543131-10543514)
chr6 (17-60)||(10543666-10543709)
chr6 (360-448)||(6389707-6389795)
chr6 (358-392)||(22965912-22965946)
chr6 (358-392)||(23822447-23822481)
chr6 (360-393)||(12235526-12235559)
chr6 (360-393)||(34446584-34446617)
chr6 (360-428)||(6299496-6299564)
chr6 (360-428)||(6306306-6306374)
[»] chr4 (5 HSPs)
chr4 (363-450)||(7012029-7012115)
chr4 (360-444)||(24343475-24343559)
chr4 (314-353)||(3144584-3144623)
chr4 (359-393)||(31243554-31243588)
chr4 (361-393)||(20743286-20743318)
[»] chr5 (3 HSPs)
chr5 (360-444)||(26205767-26205851)
chr5 (361-444)||(19293431-19293514)
chr5 (360-450)||(21137651-21137741)
[»] chr7 (3 HSPs)
chr7 (377-450)||(19206012-19206085)
chr7 (360-450)||(4017801-4017891)
chr7 (361-393)||(23930238-23930270)
[»] chr1 (1 HSPs)
chr1 (319-444)||(398735-398856)
[»] chr3 (4 HSPs)
chr3 (346-393)||(20691338-20691385)
chr3 (361-443)||(25652039-25652121)
chr3 (360-393)||(1830362-1830395)
chr3 (360-444)||(24205048-24205132)
[»] chr2 (3 HSPs)
chr2 (360-437)||(24011012-24011088)
chr2 (360-436)||(10535766-10535842)
chr2 (360-392)||(11308011-11308043)
[»] scaffold0314 (1 HSPs)
scaffold0314 (368-408)||(8952-8992)
[»] chr8 (1 HSPs)
chr8 (317-393)||(34897104-34897180)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 61 - 444
Target Start/End: Complemental strand, 10543514 - 10543131
Alignment:
Q  61 aaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatggagacaaggtttggaaagttcatacgcagctttgttcttcctcacaatgct 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10543514 aaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatggagacaaggtttggaaagttcatacgcagctttgttcttcctcacaatgct 10543415  T
Q  161 attatgtgttctatttccgcttcttgtcgaaatggtgttcttagtgttattgttcttaaaaaactgcatcctcctggtcactttgacaagcctatgagaa 260  Q
    | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  10543414 agtatgtcttctatttccgcttcttgtcgaaatggtgttcttagtgttattgttcttaaaaaactgcatcctcctgatcactttaacaagcctatgagaa 10543315  T
Q  261 ccattcaagtcaagaatggcttgaattgaaacccnnnnnnnnataatagtcgttatctatgaagcacggacacttctgagattaggtgtgtctgacattg 360  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |    
T  10543314 ccattcaagtcaagaatggcttgaattgaaacccttttttttataatagtcgttatctatgaagcacaaacacttctgagattaggtgtgtctgacaccg 10543215  T
Q  361 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 444  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  10543214 acacccatgattacgttgaattatgtcatttttagaaaattttatcgaagttggcgtgttggtgttcgtgtcgtgtctggtgtc 10543131  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 10543709 - 10543666
Alignment:
Q  17 acttctgattctgataatgttgttcaacctcttcctaaaatcat 60  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  10543709 acttctgattctgataatgttgttcaacctctttctaaaatcat 10543666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 448
Target Start/End: Complemental strand, 6389795 - 6389707
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtg 448  Q
    ||||||||||||||| || |||||| ||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||||||    
T  6389795 gacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtg 6389707  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 392
Target Start/End: Original strand, 22965912 - 22965946
Alignment:
Q  358 ttgacacctatgattacgctgaattatgtcatttt 392  Q
    ||||||||||||||||||||||||||| |||||||    
T  22965912 ttgacacctatgattacgctgaattatatcatttt 22965946  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 23822481 - 23822447
Alignment:
Q  358 ttgacacctatgattacgctgaattatgtcatttt 392  Q
    ||||||||||||||||||||||||||| |||||||    
T  23822481 ttgacacctatgattacgctgaattatatcatttt 23822447  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 12235526 - 12235559
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttc 393  Q
    ||||||||||||||| ||||||||||||||||||    
T  12235526 gacacctatgattacactgaattatgtcattttc 12235559  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 34446617 - 34446584
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttc 393  Q
    ||||||||||||||| ||||||||||||||||||    
T  34446617 gacacctatgattacactgaattatgtcattttc 34446584  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 6299564 - 6299496
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 428  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6299564 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6299496  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 428
Target Start/End: Complemental strand, 6306374 - 6306306
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccg 428  Q
    ||||||||| |||||  |||||||| ||||||||  ||| | ||||| | |||||||||||||||||||    
T  6306374 gacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgtccg 6306306  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 7012115 - 7012029
Alignment:
Q  363 acctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 450  Q
    ||||||||| || ||||||||||||||||||  ||| | ||||||  |||||||||| |||||||||||| ||||| |||||||||||    
T  7012115 acctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtccgtgtcctgtct-gtgtctgtgct 7012029  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 24343559 - 24343475
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 444  Q
    ||||||||| ||||| ||||||||||| ||||||  ||| | |||||   |||||||||| || |||||||||||||| ||||||    
T  24343559 gacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtc 24343475  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 353
Target Start/End: Original strand, 3144584 - 3144623
Alignment:
Q  314 tatctatgaagcacggacacttctgagattaggtgtgtct 353  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  3144584 tatctatgaagcacggacacttctcggattaggtgtgtct 3144623  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Original strand, 31243554 - 31243588
Alignment:
Q  359 tgacacctatgattacgctgaattatgtcattttc 393  Q
    |||||||||||||||| ||||||||||||||||||    
T  31243554 tgacacctatgattacactgaattatgtcattttc 31243588  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Original strand, 20743286 - 20743318
Alignment:
Q  361 acacctatgattacgctgaattatgtcattttc 393  Q
    |||||||||||||| ||||||||||||||||||    
T  20743286 acacctatgattacactgaattatgtcattttc 20743318  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 26205767 - 26205851
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 444  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||   ||| |||||  |||||| |||| |||| ||||||    
T  26205767 gacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtccggtgtc 26205851  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 19293431 - 19293514
Alignment:
Q  361 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 444  Q
    |||| ||||||||| || |||||||| ||||||  ||| | |||| |  ||| ||||||||||||| |||||||||||||||||    
T  19293431 acacatatgattacacttaattatgttattttcttaaattattattggtgtcagcgtgttggtgtctgtgtcgtgtctggtgtc 19293514  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 450
Target Start/End: Complemental strand, 21137741 - 21137651
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 450  Q
    ||||||||||||| | |||||||| |||||||||  | | | ||| ||| ||||||||||  |||||||||| ||||| |||||| |||||    
T  21137741 gacacctatgatttcactgaattacgtcattttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgtgct 21137651  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 19206085 - 19206012
Alignment:
Q  377 tgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 450  Q
    |||||||||| ||||||  ||| | ||| ||  |||||||||||||||||||||||||||||||| || |||||    
T  19206085 tgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtctggtatccgtgct 19206012  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 4017801 - 4017891
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtctgtgct 450  Q
    ||||| ||||||||| || |||||| || |||||  ||| | |||||   |||||||||| |||||||||||||||||  |||||||||||    
T  4017801 gacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtccagtgtctgtgct 4017891  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 23930270 - 23930238
Alignment:
Q  361 acacctatgattacgctgaattatgtcattttc 393  Q
    |||||||||||||| ||||||||||||||||||    
T  23930270 acacctatgattacactgaattatgtcattttc 23930238  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 444
Target Start/End: Original strand, 398735 - 398856
Alignment:
Q  319 atgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtg 418  Q
    ||||||||||||||||||| |||||||| |||||       ||||||||| ||||| ||||||||||| |||||   ||| | ||| ||  |||||||||    
T  398735 atgaagcacggacacttcttagattaggcgtgtcccg----gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtg 398830  T
Q  419 ttggtgtccgtgtcgtgtctggtgtc 444  Q
    |  |||||||||||||||| ||||||    
T  398831 tcagtgtccgtgtcgtgtccggtgtc 398856  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 20691385 - 20691338
Alignment:
Q  346 gtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 393  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttc 20691338  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Original strand, 25652039 - 25652121
Alignment:
Q  361 acacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgt 443  Q
    |||||||| | ||| ||||||||| ||||||||  ||| | |||||   || |||||||| ||||||||||||||||||||||    
T  25652039 acacctataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtccgtgtcgtgtctggtgt 25652121  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 1830395 - 1830362
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttc 393  Q
    ||||||||||||||| ||||||||||||||||||    
T  1830395 gacacctatgattacactgaattatgtcattttc 1830362  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 24205048 - 24205132
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtctggtgtc 444  Q
    ||||| ||| ||||| ||| ||||||||||||||  ||| | |||||   ||||||||||  |||||||||||||||| ||||||    
T  24205048 gacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtc 24205132  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 24011088 - 24011012
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgtc 437  Q
    ||||||||||||||| || |||||||||||||||  ||| | ||||| | |||||||| |||||||  ||||||||||    
T  24011088 gacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt-ttggtgtttgtgtcgtgtc 24011012  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 10535766 - 10535842
Alignment:
Q  360 gacacctatgattacgctgaattatgtcattttcagaaaattttatcgaagtcggcgtgttggtgtccgtgtcgtgt 436  Q
    ||||| ||||||||| ||||||||||||||||||  ||| | ||||||  |||||||| || || || |||||||||    
T  10535766 gacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 11308011 - 11308043
Alignment:
Q  360 gacacctatgattacgctgaattatgtcatttt 392  Q
    ||||||||||||||| |||||||||||||||||    
T  11308011 gacacctatgattacactgaattatgtcatttt 11308043  T

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Target: scaffold0314 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 8992 - 8952
Alignment:
Q  368 tgattacgctgaattatgtcattttcagaaaattttatcga 408  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  8992 tgattacgttgaattatgtcattttctcaaaattttatcga 8952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 34897180 - 34897104
Alignment:
Q  317 ctatgaagcacggacacttctgagattaggtgtgtctgacattgacacctatgattacgctgaattatgtcattttc 393  Q
    |||||||||||||||||| ||   ||||  |||||| ||||| ||||| ||| ||||| ||||||||||| ||||||    
T  34897180 ctatgaagcacggacactcctcgaattacatgtgtccgacatcgacacatataattacactgaattatgtgattttc 34897104  T

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