View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_18 (Length: 448)
Name: NF1705_low_18
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 1846577 - 1846882
Alignment:
| Q |
11 |
cagagacaaaaggagaacaaacccgcaaaaaagactgggaagtctaatgttactgtgctggatgagtaagagtttttattgaataa-ctataatgtcagt |
109 |
Q |
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| T |
1846577 |
cagaaacaaaaggagaacaaacccgcaaaaa-gactgggaagtctaatgttactgtgctggatgcgtaagagtttttattgaataaactataatatcagt |
1846675 |
T |
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| Q |
110 |
tgcattgctccttttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaacccat |
209 |
Q |
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| T |
1846676 |
tgcattgctccctttatttgcaaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaacccat |
1846775 |
T |
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| Q |
210 |
tatgcagatttcattaatgttcgtgatacttttatgcaattgttttcgcctctctgttctttcttttcctgtatcttttgatggtgaagatatttctctt |
309 |
Q |
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| T |
1846776 |
tatgcggatttcattaatgttcgtgatacttttatgcaattgttttcgcctctctgttttttcttttcctgtatcttttgatggtgaagatatttctctt |
1846875 |
T |
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| Q |
310 |
ttatgag |
316 |
Q |
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||||||| |
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| T |
1846876 |
ttatgag |
1846882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 313 - 433
Target Start/End: Original strand, 1847029 - 1847147
Alignment:
| Q |
313 |
tgagttgatatctattgtccagataaacaccaacgccctcaaacttctcggtgcatgaca---tcaatagttcagttggatggtgaataaattgaagagc |
409 |
Q |
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| T |
1847029 |
tgagttgatatctattgtccagataaacaccaacaccctcaaacttctcggtgcatgacatactcaat-----agttggatggtgaataaatttaagagc |
1847123 |
T |
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| Q |
410 |
tactactgtcaagaggccgatgct |
433 |
Q |
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| T |
1847124 |
tactactgtcaagaggccgatgct |
1847147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 21778405 - 21778234
Alignment:
| Q |
131 |
aaaatttcatttaagatctgcatatcatatcatgattctcactatgccatgaatttctataagagcgtaggaaa-----------cccattatgcagatt |
219 |
Q |
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| T |
21778405 |
aaaatttcatttaagatct-----tgatatcatgattctcactatgccatgaatttctatagaagagtttgaaaacatactagaacccattttgcggttt |
21778311 |
T |
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| Q |
220 |
tcattaatgttcgtgatacttttatgcaattgttttcgcctctctgttctttcttttcctgtatcttttgatggtga |
296 |
Q |
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| T |
21778310 |
tctttaacattcttgatacttttatgtaattgttttcgcctctttatcttttcttttcttgtatcctttgatggtga |
21778234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 43863560 - 43863513
Alignment:
| Q |
157 |
atatcatgattctcactatgccatgaatttctataagagcgtaggaaa |
204 |
Q |
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| T |
43863560 |
atatcatgattctcactatgatatgaatttctataaaagagtaggaaa |
43863513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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