View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_22 (Length: 432)
Name: NF1705_low_22
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 7222390 - 7222115
Alignment:
| Q |
1 |
aggaccatcgctcggatgaacgaagaagggaggggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcattgcgatgaacgaa |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222390 |
aggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcattgcgatgaacgaa |
7222291 |
T |
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| Q |
101 |
ggcaaactgcgga---tcgctacacaacgaatgataccatgttaagatgaaaaaccacatatgagaataagaagaaggagaagattgaataaggaaaagt |
197 |
Q |
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| T |
7222290 |
ggcaaactgcggaggatcgctacacaacgaatgataccatgttaagatgaaaaagcacatatgagaataagaagaaggagaagattgaataaggaaaagt |
7222191 |
T |
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| Q |
198 |
gtgattctcatagattgaattgtgagcttacaactaattatacaggaaaagtaagtgtgcacaagcgcatcacaca |
273 |
Q |
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| T |
7222190 |
gggattctcatagattgaattgtgagcttacaactaattatataggaaaagtaagtgtgcacaagcgcatcacaca |
7222115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 7222110 - 7222037
Alignment:
| Q |
340 |
aaagcacaaatgaagcataaccgatcaaaagatggaagaagaaacacaaactaataacaattcaacatagatag |
413 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7222110 |
aaagcacaaatgatgcataaccgatcaaaagatggaagaagaaacacaaactaataacaactcaacatagatag |
7222037 |
T |
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