View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_23 (Length: 431)

Name: NF1705_low_23
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_23
NF1705_low_23
[»] chr3 (2 HSPs)
chr3 (3-118)||(43818738-43818853)
chr3 (361-415)||(43818607-43818661)
[»] chr4 (1 HSPs)
chr4 (119-188)||(52970358-52970427)
[»] chr5 (2 HSPs)
chr5 (230-303)||(13284602-13284673)
chr5 (118-188)||(13284489-13284560)
[»] chr8 (1 HSPs)
chr8 (110-177)||(30363237-30363304)
[»] chr7 (2 HSPs)
chr7 (55-95)||(21747760-21747799)
chr7 (369-413)||(21747939-21747983)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 43818853 - 43818738
Alignment:
Q  3 caaaggcacatgttatcacattcaaaataggtcttaggagaaatttatatactgtctcatgcaataaatgtaatatgcaaaatacaactaatacccaaaa 102  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43818853 caaaggcacatgttagcacattcaaaataggtcttacgagaaatttatatattgtctcatgcaataaatgtaatatgcaaaatacaactaatacccaaaa 43818754  T
Q  103 tgaatctttttaaaaa 118  Q
    ||||||||||||||||    
T  43818753 tgaatctttttaaaaa 43818738  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 43818661 - 43818607
Alignment:
Q  361 agacaccaaactgatccgaaaagaatatgcacaaagagcttaaacatcaccaaca 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43818661 agacaccaaactgatccgaaaagaatatgcacaaagagcttaaacatcaccaaca 43818607  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 52970358 - 52970427
Alignment:
Q  119 gagaaatgcttaatagcacgacatacattgtcgtgtaagccacacgacctttgtattcctctaaacctga 188  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  52970358 gagaaatgcttaatagcacgacatacattgtcgtgtaagccgcacgacctttgtattcctataaacctga 52970427  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 13284602 - 13284673
Alignment:
Q  230 aaaaagtaggtgaagccacgtgatgtttcgtgtgttggtgggtgtgaagtgtcgtgcacaccatagcacctctc 303  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  13284602 aaaaagtaggtgaagccacgtgatatttcgtgtgttcgtgggtgtgaagtgtcgtg--caccatagcacctctc 13284673  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 13284489 - 13284560
Alignment:
Q  118 agagaaatgcttaatagcacgacatacattgtcgtgtaagccacacgacc-tttgtattcctctaaacctga 188  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  13284489 agagaaatgtttaatagcacgacatacattgtcgtgtaagccgcactaccttttgtattcctctaaacctga 13284560  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 30363237 - 30363304
Alignment:
Q  110 ttttaaaaagagaaatgcttaatagcacgacatacattgtcgtgtaagccacacgacctttgtattcc 177  Q
    |||||| ||| ||||||||||||||||||||||| | |||||||| | || ||||||| |||||||||    
T  30363237 ttttaacaagcgaaatgcttaatagcacgacataaactgtcgtgtgaaccgcacgaccattgtattcc 30363304  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 21747760 - 21747799
Alignment:
Q  55 tgtctcatgcaataaatgtaatatgcaaaatacaactaata 95  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  21747760 tgtctcatgcaataa-tgtaatctgcaaaatacaactaata 21747799  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 21747939 - 21747983
Alignment:
Q  369 aactgatccgaaaagaatatgcacaaagagcttaaacatcaccaa 413  Q
    ||||||| ||||||||| ||||||||| | |||||||||||||||    
T  21747939 aactgatacgaaaagaagatgcacaaaaaacttaaacatcaccaa 21747983  T

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