View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_25 (Length: 419)
Name: NF1705_low_25
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 45133365 - 45133755
Alignment:
| Q |
18 |
gagcgcatattggtgtagtagctaaatatcgagagattctcttggagaacttccttcaaacactcaatgccatgttcgagtttttgattagggtgcattg |
117 |
Q |
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| T |
45133365 |
gagcgcatattggtgcagtagctaaatatcgagagattctcttggagaacttccttcaaacactcaatgccatgttcgaggttttgattagggtgcattg |
45133464 |
T |
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| Q |
118 |
ttgattgttggggttgtattatgatcaaacgtggtgttcctgcaaccgggaaaagagctattcaagaacacattttctcattacttcaaacctgcaacaa |
217 |
Q |
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| T |
45133465 |
ttgattgttggggttgtattatgatcaaacgtggtgttcctgcaaccgggaaaagagctattcaagaacacattttctcattacttcaaacctgcaacaa |
45133564 |
T |
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| Q |
218 |
caccgaaaccaatatccttcaaattcatacccaagtaattctcaacggtctctctcacaagaataacatcatcgccaagcttctttcattctatgcagcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45133565 |
caccgaaaccaatatccttcaaattcatacccaagtaattctcaacggtctctctcacaagcataacatcatcgccaagcttctttcattctatgcagcc |
45133664 |
T |
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| Q |
318 |
tctggtaaactccaacatgcccacaaactcttcattcaaatccataacccaaaaaccactgtctggaatcacatgattagagcctatgcta |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45133665 |
tctggtaaactccaacatgcccacaaactcttcattcaaatccataacccaaaaaccactgtctggaatcacatgattagagcctatgcta |
45133755 |
T |
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