View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_26 (Length: 418)
Name: NF1705_low_26
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 408
Target Start/End: Original strand, 1685048 - 1685462
Alignment:
| Q |
12 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1685048 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatg |
1685147 |
T |
|
| Q |
112 |
gtatagaaagttgggctgcaattcattcaaa---------------atgttatagaaagttgaagagccnnnnnnntcaatagttaacgtcgttatttta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
1685148 |
gtatagaaagttgggctgcaattcattcaaataattcattagtagtatgttatagaaagttgaagagccaaaaaaatcaatagttaacatcgttatttta |
1685247 |
T |
|
| Q |
197 |
ttgaagctttgaaaactattagtgtaagtgtat--ttttgaagtttatctttnnnnnnntcaggatgagtttgatgaaaccacagtgacatccttattta |
294 |
Q |
| |
|
|||||||||| || |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
1685248 |
ttgaagcttttaagactaatagtgtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcactgtgacattgttattta |
1685347 |
T |
|
| Q |
295 |
attttattgaaacttctaaaaatcagtttttccaaaattagatcat-gtcaaactcatcgttgatctaaatatagctggtatactaaggttgattctttc |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1685348 |
attttattgaaacttctaaaaatcagtttttccgaaattagattatattcaaactcatcgttgatctaaatatagctggtatacttaggttgattctttc |
1685447 |
T |
|
| Q |
394 |
gttaaaatagaataa |
408 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1685448 |
gttaaaatagaataa |
1685462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 1695375 - 1695495
Alignment:
| Q |
12 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
1695375 |
cacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccacatccttcttcttgataatc |
1695474 |
T |
|
| Q |
112 |
gtatagaaagttgggctgcaa |
132 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
1695475 |
ttatagaaagttggactgcaa |
1695495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 1971528 - 1971658
Alignment:
| Q |
12 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatg |
111 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | ||||| || |||||| ||||||||| ||||| |
|
|
| T |
1971528 |
cacaaaaggcattccataaaacacccaaaatgcacaattcagcagagttgctaagtatggatctggtttgaattcttccacagacttcttcttgataatt |
1971627 |
T |
|
| Q |
112 |
gtatagaaagttgggctgcaattcattcaaa |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
1971628 |
caatagaaagttggattgcaattcattcaaa |
1971658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 1675678 - 1675776
Alignment:
| Q |
12 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataat |
110 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| || | |||||| ||||| || |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1675678 |
cacaaaaggcaatccatggaatacccaaaatgcacaattcaacacaattgctatgtatgtatcagacttgaactcctccacatcccttttctttataat |
1675776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 1700820 - 1700948
Alignment:
| Q |
12 |
cacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatg |
111 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||| || |||||||||||||||| | |||||||| |||||| ||||||||||||||| |
|
|
| T |
1700820 |
cacaaaaggcattccataaaacacccaaaaagcacaattcaacaatgttgctaagtatggatctggtttgaactcttccacagacttcttctttataatt |
1700919 |
T |
|
| Q |
112 |
gtatagaaagttgggctgcaattcattca |
140 |
Q |
| |
|
|||||||||||| ||||||| |||||| |
|
|
| T |
1700920 |
ccatagaaagttggactgcaatacattca |
1700948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 339 - 408
Target Start/End: Original strand, 1695925 - 1695994
Alignment:
| Q |
339 |
atgtcaaactcatcgttgatctaaatatagctggtatactaaggttgattctttcgttaaaatagaataa |
408 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
1695925 |
atgtcagactcatcgttgatctaaatatagcaggtatactaaggttgattctttcatgaaaatagaataa |
1695994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 1695725 - 1695812
Alignment:
| Q |
142 |
aatgttatagaaagttgaagagccnnnnnnntcaatagttaacgtcgttattttattgaagctttgaaaactattagtgtaagtgtat |
229 |
Q |
| |
|
||||||| |||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1695725 |
aatgttaaagaaagttgaagtgccaaaaaaatcaatagttaacattgttattttattgaagctttgaaaactaatagtgtaagtgtat |
1695812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 1695814 - 1695852
Alignment:
| Q |
298 |
ttattgaaacttctaaaaatcagtttttccaaaattaga |
336 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
1695814 |
ttattgaaacttctaaaaatcagttttacccaaattaga |
1695852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 1695681 - 1695710
Alignment:
| Q |
113 |
tatagaaagttgggctgcaattcattcaaa |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1695681 |
tatagaaagttgggctgcaattcattcaaa |
1695710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University