View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_27 (Length: 416)
Name: NF1705_low_27
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Original strand, 39245398 - 39245782
Alignment:
| Q |
14 |
agacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
113 |
Q |
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| T |
39245398 |
agacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
39245497 |
T |
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| Q |
114 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
213 |
Q |
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| T |
39245498 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
39245597 |
T |
|
| Q |
214 |
caattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgc |
313 |
Q |
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| T |
39245598 |
caattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgc |
39245697 |
T |
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| Q |
314 |
ctgctgcaatgatgtacaaagcaaagaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctac |
398 |
Q |
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| T |
39245698 |
ctgctgcaatgatgtacaaagcaaagaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctac |
39245782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 32 - 380
Target Start/End: Original strand, 39251420 - 39251766
Alignment:
| Q |
32 |
ttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatatggttggaatcccataacc |
131 |
Q |
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| T |
39251420 |
ttaaagggcttccagaaggtaatctatgtctataaagtggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaagatggttggaatcccataacc |
39251519 |
T |
|
| Q |
132 |
aagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccaccaattgtaaaaggaaagt |
231 |
Q |
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| T |
39251520 |
aagggcaaa-ccaacattgtcttgtatgtagactaatcctgtttcggctaaaatgcctccagttataatgcagaacacccaccaattgaaaaaggaaagt |
39251618 |
T |
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| Q |
232 |
ttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgcctgctgcaatgatgtaca |
331 |
Q |
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| T |
39251619 |
ttttgggacctctctttaggctcaaactcatcaaattggtcggctccaggtgtggagatgttgggcttaa-tccccccgtgcctgctgcaatgatgtaca |
39251717 |
T |
|
| Q |
332 |
aagcaaagaagaaaataccaatttgtagtgatgaagctttttggcaatc |
380 |
Q |
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| T |
39251718 |
aagcaaagaagaaaataccaatttgtagtgatgaagctttttggcaatc |
39251766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 39260994 - 39261362
Alignment:
| Q |
14 |
agacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
113 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||| ||| || || |||| |||||||||| | |||| |||||||||||| |
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| T |
39260994 |
agacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacaccaatatggaaacaacaagcaatat |
39261093 |
T |
|
| Q |
114 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgtagactaatactgtttcggctaaaatggctccaattataatgtagaacacccac |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||| ||| |||||| |||||||| |||||| ||||||||| |
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| T |
39261094 |
ggttggaatcccatagccaagggcaaaaccaacattgtcttgtatgtaaaccaatattgtttgagctgaaatggttccaattaaaatgtaaaacacccac |
39261193 |
T |
|
| Q |
214 |
caattgtaaaaggaaagtttttgagacttctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgc |
313 |
Q |
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|||||||| || ||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||| |||| ||| |||||||| |||||||||||| |
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| T |
39261194 |
caattgtagaatgaaagtttttgggacctctctttaggctcaaactcatcaaattggtctgctccaatggtggaaatgttgggcttagttccccctgtgc |
39261293 |
T |
|
| Q |
314 |
ctgctgcaatgatgtacaaagcaaagaagaaaataccaatttgtagtgatgaagctttttggcaatcct |
382 |
Q |
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| T |
39261294 |
ctgctgcaatgatgtacaaagcaaagaagaaaataccaatttgtagcgatgaagctttttggcaatcct |
39261362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 39239575 - 39239722
Alignment:
| Q |
14 |
agacttgaaccattctagttaaaggacttcctgaaggcaatttatgtctataaattggtgttccaaacaaaaacaccaatgttgaaaaaacaagcaatat |
113 |
Q |
| |
|
||||||||| ||| || |||| ||| || |||| ||||||||| ||||||||| ||||||||| || |||||||||||| ||||||| |||| || |
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| T |
39239575 |
agacttgaagcatccttgttatagggctgcctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgcaaggccaat |
39239674 |
T |
|
| Q |
114 |
ggttggaatcccataaccaagggcaaaaccaacattgtcttgtatgta |
161 |
Q |
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|||||||| ||||| ||||| | |||||| ||||||||||||||| |
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| T |
39239675 |
ggttggaaggccatatccaagttcccaaccaatattgtcttgtatgta |
39239722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 39216376 - 39216484
Alignment:
| Q |
242 |
tctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgcctgctgcaatgatgtacaaagcaaagaa |
341 |
Q |
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||||||| ||||| ||||| ||||||||||| ||||| | ||| | ||| ||||||| |||| ||||| ||| | ||||||||||||| |||| ||| |
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| T |
39216376 |
tctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgttgggcttggttcctcctgttcctacagcaatgatgtacagggcaaggaa |
39216475 |
T |
|
| Q |
342 |
gaaaatacc |
350 |
Q |
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||||||||| |
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| T |
39216476 |
gaaaatacc |
39216484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 39177914 - 39178022
Alignment:
| Q |
242 |
tctctttcggctcaaactcatcaaattggtcggctccaagtgtggtgatgctgggcttaattccccctgtgcctgctgcaatgatgtacaaagcaaagaa |
341 |
Q |
| |
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||||||| ||||| ||||| ||||||||||| ||||| | ||| | ||| | ||||| | |||||||||||| | |||||||| |||| |||| ||| |
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| T |
39177914 |
tctctttgggctcgaactcgtcaaattggtctgctcccattgtagaaatgtttggcttggtcccccctgtgcctacggcaatgatatacagggcaaggaa |
39178013 |
T |
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| Q |
342 |
gaaaatacc |
350 |
Q |
| |
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||||||||| |
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| T |
39178014 |
gaaaatacc |
39178022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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