View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_28 (Length: 416)
Name: NF1705_low_28
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 37307737 - 37307456
Alignment:
| Q |
4 |
atgtcgaagaatataatgtagttccaagacttgaaccaatgcaccgtagataagtaaacgtagccaataataacctacttcacgatgcatattcacaaaa |
103 |
Q |
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| T |
37307737 |
atgtcaaagaacataatgtagttccaagacttgaaccaatgcaccgtagataagtaaacgtagccaataataacctacttcacgatgcatattcacaaaa |
37307638 |
T |
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| Q |
104 |
gaccttcttgtaagaatgaggcattgggttaaaaagtcagcatgacttttctttttcattgtgtcgaagacctgcatgcatcaatttgttcatcaacttt |
203 |
Q |
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| T |
37307637 |
gaccttcttgtaagaatgaggcattgggttaaaaagtcagcatgacttttctttttccttgtgtcgaagacctgcatgcatcaatttgttcatcaacttt |
37307538 |
T |
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| Q |
204 |
tatattctcttttgtgatcttagcttaaattag-nnnnnnnnaaataagaacatacacttcccttgaactataaatcagttc |
284 |
Q |
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| T |
37307537 |
tatattctcttttgtgatcttagcttaaattagtttttttttaaataagaacatacacttcccttgaactataaatcagttc |
37307456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 37307410 - 37307343
Alignment:
| Q |
330 |
gagtcacgcttaataaaaataggtaactgtaatctgggctgcgacatcaatgtttttgatgtctctgt |
397 |
Q |
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| T |
37307410 |
gagtcacgcttaataaaaatatgtaactgtaatctgggctgcgacatcaatgtttttgatgtctctgt |
37307343 |
T |
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