View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_29 (Length: 409)
Name: NF1705_low_29
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 41324518 - 41324126
Alignment:
| Q |
1 |
attgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacannnnnnnaagcatccttctagatatactaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41324518 |
attgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacatttttttaagcatccttctagatatactaag |
41324419 |
T |
|
| Q |
101 |
tagaaatcacttccaaatttcaagcnnnnnnngagttgcataaataacaagattaatactacctaaattcattgataaatttaattatgtaacataatac |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324418 |
tagaaatcacttccaaatttcaagcaaaaaaagagttgcataaataacaagattaatactacctaaattcattgataaatttaattatgtaacataatac |
41324319 |
T |
|
| Q |
201 |
aggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggtaaaaaatcaaacgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324318 |
aggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggtaaaaaatcaaacgaat |
41324219 |
T |
|
| Q |
301 |
tgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgcagagaatag |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324218 |
tgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgcagagaatag |
41324126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41309820 - 41309754
Alignment:
| Q |
1 |
attgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatata |
67 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
41309820 |
attgaaacttctcttttggggtatacttttgcaaggtaaacaaaactcttcaaactcactaaatata |
41309754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 41309659 - 41309612
Alignment:
| Q |
237 |
atatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
284 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
41309659 |
atatggagttaacatgaaatttatcagatggtgtggcattctccaggt |
41309612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 27657326 - 27657379
Alignment:
| Q |
232 |
ctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggta |
285 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27657326 |
ctctcatatggagttgacatgaaatttatcagatggtgtggcattcttcaggta |
27657379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University