View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_3 (Length: 690)
Name: NF1705_low_3
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 7 - 676
Target Start/End: Original strand, 34200219 - 34200888
Alignment:
| Q |
7 |
gtgagatgaactaatgtacattaataaagtaaccaaaccaaacatgtcacgtgaaacataaattatcttatcttttataagatgtttcagaagctgcaaa |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34200219 |
gtgatatgaactaatgtacattaataaagtaaccaaaccaaacatgtcacgtgaaacataaattatcttatcttttataagatgtttcagaagctgcaaa |
34200318 |
T |
|
| Q |
107 |
taattttcctccaaaatttataagcataacttatccataaatgttaaatataattacagaaaatatggttactgaatctatgaagaatttaaattgaaag |
206 |
Q |
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| T |
34200319 |
taattttcctccaaaatttataagcataacttatccataaatgttaaatataattacagaaaatatggttactgaatctatgaagaatttaaattgaaag |
34200418 |
T |
|
| Q |
207 |
ggtctgaattagaattggtaacactaattagtagacaaagccaagaacagcctgtaactaactatactgtaattatcagagtaaacagtcattttgatcc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34200419 |
ggtctgaattagaattggtaacactaattagtagacaaagccaagaacagcctgtaactaactatactgtaattatcagagtaaacagtcattttgatcc |
34200518 |
T |
|
| Q |
307 |
ttcagtgctgtcactatagtccgtaaatgtatacacattccttagagagattgattcttgaatatgtttttcattggtttgttttgatcctcgaatgtga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34200519 |
ttcagtgctgtcactatagtccgtaaatgtatacacattccttagagagattgattcttgaatatgtttttcattggtttgttttgatcctcgaatgtga |
34200618 |
T |
|
| Q |
407 |
aattgataacaaaaaacacacattcagaaactatagtaacattgtttgatacatttagggactaaaataacgatttactcagtaactatcacggaggaga |
506 |
Q |
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| T |
34200619 |
aattgataacaaaaaacatacattcagaaactatagtaacattgtttgatacatttagggactaaaataacgatttactcagtaactatcacggaggaga |
34200718 |
T |
|
| Q |
507 |
ttgtgattttgaaaaatgtgaatgtgattgtgaagagaatcgagcattctcagaggtacttacagacatagaaccacaaacaagaggttttggtgttgga |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34200719 |
ttgtgattttgaaaaatgtgaatgtgattgtgaagagaatcgagcgttctcagaggtacttacagacatagaaccacaaacaagaggttttggtgttgga |
34200818 |
T |
|
| Q |
607 |
attctgagacaacttaagctaccacctgggatcatagaacactcaggttgaggtctttgcatgttcctcc |
676 |
Q |
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| T |
34200819 |
attctgagacaacttaagctaccacctgggatcatagaacactcaggttgaggtctttgcatgttcctcc |
34200888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 674
Target Start/End: Complemental strand, 43030949 - 43030837
Alignment:
| Q |
562 |
gtacttacagacatagaaccacaaacaagaggttttggtgttggaattctgagacaacttaagctaccacctgggatcatagaacactcaggttgaggtc |
661 |
Q |
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|||||| ||| || || |||||||| |||||||||||| || |||||||| |||||| | || ||||||| ||||||| |||||||||||||||||| |
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| T |
43030949 |
gtacttgcagccaaagtaccacaaataagaggttttggggtaggaattctaagacaattcaaattaccaccagggatcactgaacactcaggttgaggtt |
43030850 |
T |
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| Q |
662 |
tttgcatgttcct |
674 |
Q |
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| T |
43030849 |
tctgcatattcct |
43030837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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