View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_30 (Length: 408)
Name: NF1705_low_30
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 34100233 - 34099826
Alignment:
| Q |
1 |
ggtttaatatgtcaaatagcaatccagtaaaagttctcatgattcttgtatttaaacttggcaaagatgtatgcaataagtctcaaagggaatcttacgc |
100 |
Q |
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| T |
34100233 |
ggtttaatatgtcaaatagcaatccagtaaaagttctcatgattcttgtatttaaacttggcaaagatgtatgcaataagtctcaaagggaatcttacgc |
34100134 |
T |
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| Q |
101 |
tttcttagtttatagtaaattcaattcatattacttaatcttttctatagtagttatggaatccacacgattgaaagacaatgtttgttcttcaatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34100133 |
tttcttagtttatagtaaattcaattcatattacttaatcttttctattgtagttatggaatccacacgattgaaagacaatgtttgttcttcaatgtaa |
34100034 |
T |
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| Q |
201 |
ccaactaaagcaaaggatgttattattaatgcgcattagtctatcattcaactgaaatcatagatgacaatacaatagtaagcatggaatcaatgacata |
300 |
Q |
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| T |
34100033 |
ccaactaaagcaaaggatattattattaatgcgcattagtctatcattcaactgaaatcatagatgacaatacaatagtaagcatggaatcaatgacata |
34099934 |
T |
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| Q |
301 |
gttctcattaatttttgtatgcattgtgagagtaaagttattttacacttgcattcaatgatgtattgtcacatatgatttgtcatagttattaattgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||||| || |
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| T |
34099933 |
gttctcattaatttttgtatgcattgtgagagtaaagttattttacacatgcattcaatgatgtattatcacacatgatttgtcatacttattaattaat |
34099834 |
T |
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| Q |
401 |
gcggcaac |
408 |
Q |
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| T |
34099833 |
acggcaac |
34099826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 13292790 - 13292830
Alignment:
| Q |
332 |
gtaaagttattttacacttgcattcaatgatgtattgtcac |
372 |
Q |
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| T |
13292790 |
gtaaaattattttacacattcattcaatgatgtattgtcac |
13292830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 13807479 - 13807526
Alignment:
| Q |
317 |
gtatgcattgtgagagtaaagttattttacacttgcattcaatgatgt |
364 |
Q |
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| T |
13807479 |
gtatgcattgtcaatgtaaagttattttacacatgcattcaatgatgt |
13807526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 49365486 - 49365438
Alignment:
| Q |
314 |
tttgtatgcattgtgagagtaaagttattttacacttgcattcaatgat |
362 |
Q |
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|||||||| ||||| || ||||||||||||||||||| |||| |||||| |
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| T |
49365486 |
tttgtatggattgttagtgtaaagttattttacacttacattaaatgat |
49365438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 35120223 - 35120187
Alignment:
| Q |
332 |
gtaaagttattttacacttgcattcaatgatgtattg |
368 |
Q |
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||||||||||||||||| ||||| ||||||||||||| |
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| T |
35120223 |
gtaaagttattttacacatgcatccaatgatgtattg |
35120187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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