View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_31 (Length: 407)
Name: NF1705_low_31
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_31 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: scaffold0175 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 27672 - 27941
Alignment:
| Q |
22 |
aaatattccatggattttgataatgacagaaaatgccaagaattagtatatttttgtcaagnnnnnnnntaaataatgtgattcattcttgaaacattca |
121 |
Q |
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||||||| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| |
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| T |
27672 |
aaatatttcatggattttgataacaacaataaatgtcaagaattagtatattt--gtcaagaaaaaa--taaatagtgtgattcattcttgaaatattca |
27767 |
T |
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| Q |
122 |
ttcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcctgtaacaggacaaacttca |
221 |
Q |
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||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
27768 |
ttcttaataaaa-agtggtgactataggttgtttgtgttaacatgaatcatttgtaaaattaaatactatagctatgagcctgtaacaggacgaacttca |
27866 |
T |
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| Q |
222 |
aaattccaatccccaatatctctttactattggaaagaagacatctttcgttagtaaaaagaagagtaaaatgca |
296 |
Q |
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| T |
27867 |
aaattccaatccctaatatctcttttctattggaaagaaggcatatttcgttagtaaaaagaagagtaaaatgca |
27941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 91 - 296
Target Start/End: Complemental strand, 29276513 - 29276309
Alignment:
| Q |
91 |
taaataatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatacta |
190 |
Q |
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| T |
29276513 |
taaataatgtgattcattcttgaaacattcattcttaatagaaaagtggtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatacta |
29276414 |
T |
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| Q |
191 |
tagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttactattggaaagaagacatctttcgttagtaaaaagaagagtaa |
290 |
Q |
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| T |
29276413 |
tagctatgagcatgtaacacgacaaacttcaaaattctaatccccaacatctcttttctattgg-aagaaggcatatttctttagtaaaaagaagagtaa |
29276315 |
T |
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| Q |
291 |
aatgca |
296 |
Q |
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|||||| |
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| T |
29276314 |
aatgca |
29276309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 293 - 395
Target Start/End: Complemental strand, 29276273 - 29276174
Alignment:
| Q |
293 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
392 |
Q |
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| T |
29276273 |
tgcaatagtatcatattcctaagggaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
29276177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 55858087 - 55858252
Alignment:
| Q |
91 |
taaataatgtgattcattcttgaaacattcattcttaatagaacagtagtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatacta |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858087 |
taaataatgtgattcattcttgaaacattcattcttaatagaaaaatggtgactataggttgtttgtgttaacatgaatcatttgtaaaagtaaatacta |
55858186 |
T |
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| Q |
191 |
tagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttactattggaa |
256 |
Q |
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| T |
55858187 |
tagctatgagcatgtaacacgacaaacttcaaaattctaatccccgatatctcttttctattggaa |
55858252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 395
Target Start/End: Original strand, 55858319 - 55858418
Alignment:
| Q |
293 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
392 |
Q |
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| T |
55858319 |
tgcaatagtatcatattcctaaggtaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgatat |
55858415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 31502728 - 31502804
Alignment:
| Q |
318 |
aagagcttgaaatataattaatggatcatcaca--agactttatacggtatagacatgtcccatcttatattgatatatt |
395 |
Q |
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| T |
31502728 |
aagagcttgaaatatat---atggatcatcacacaagactttatacggtgtagacatgtcccatcctatattgatatatt |
31502804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 296
Target Start/End: Original strand, 31502648 - 31502677
Alignment:
| Q |
267 |
tttcgttagtaaaaagaagagtaaaatgca |
296 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31502648 |
tttcgttagtaaaaagaagagtaaaatgca |
31502677 |
T |
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