View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_32 (Length: 400)
Name: NF1705_low_32
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 16289461 - 16289840
Alignment:
| Q |
14 |
cacttctttcacgacaatttaccgtcccatgtagaataaggtcttagaactatccttatatggacaaaacagatggtgatgagcgaggctttaaagtgtt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
16289461 |
cacttccttcacgacaatttaccgtcccatgtagaataaggtcttagaactattcttatatggacaaaactgatggttatgagtgaggctttaaagt--- |
16289557 |
T |
|
| Q |
114 |
gatgccatatgaatatgaaatgagagtagagagatattgctcaaaaccggatgtcgcatggatttaaaatttaaggctaaaagacaaagggaaaacatta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16289558 |
--tgccatatgaatatgaaatgagagtagagagatattgctcaaaaccggatgtcgcgtggatttaaaatttaaggctaaaagacaaagggaaaacatta |
16289655 |
T |
|
| Q |
214 |
aaaattctcttaatgggagttaaggcaattttgatggaaatttaagtggacatgactatattctgaaacatgaacgtaggaccactgtaagggaaatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16289656 |
aaaattctcttaatgggagttaaggcaattttaatggaaatttaagtgaatttgactatattctgaaacatgaacgtatgaccactgtaagggaaatgat |
16289755 |
T |
|
| Q |
314 |
ttgatttaattatcacttattgtgggcaagtaaatagaattaattgtcaatttgaacacaatcaaa-gaatgtgtgtatattcat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16289756 |
ttgatttaattatcacttattgtgggcaagtaaatagaattaattgtcaatttgaacacaatcaaaggaatgtgtgtatattcat |
16289840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University