View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_34 (Length: 393)
Name: NF1705_low_34
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 2516035 - 2515656
Alignment:
| Q |
1 |
tatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttt |
100 |
Q |
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| T |
2516035 |
tatctatgaatatatgatgagactgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttt |
2515936 |
T |
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| Q |
101 |
tctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcgttcacatgtatggtatactccaacaccgacaca |
200 |
Q |
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| T |
2515935 |
tctgcattgtcatctcacaatttttaacttggattaatctaggtaaaaaatttgctacttttctgcattcacatgtatggtatactccaacaccgacaca |
2515836 |
T |
|
| Q |
201 |
tcacatgtgattacattcaatcagnnnnnnnctcgacgcgtcctgtgtttgtgtcggtacttcataggttctaaatttccctaattacaataacaacaat |
300 |
Q |
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| T |
2515835 |
tcacatgtgattacattcaatcagtttttttctcgacgcgtcctgtgtttgtgtcggtacttcataggttctaaatttccctaattacaataacaacaat |
2515736 |
T |
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| Q |
301 |
caaggtctaagttcaccaaatatcttacaaaatttcagttatggaagaagtgtatacgtagttagcctaaatgaggagaa |
380 |
Q |
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| T |
2515735 |
caaggtcttagttcaccaaatatcttacaatatttcagttatggaagaagtgtatacgtagttagcctaaatgaggagaa |
2515656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 2496446 - 2496344
Alignment:
| Q |
12 |
atatgatgagac-tgtgttcctgataatccagggagctgtgtaatcttttatggtgttattgttagagaataaaagcatttacttccttttctgcattgt |
110 |
Q |
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| T |
2496446 |
atatgatgagacctgtgttcctgatagttcagggagctgtataatgtatta--gtgttattgatagaaaataaaagcatttgcttgcctttgtgcattgt |
2496349 |
T |
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| Q |
111 |
catct |
115 |
Q |
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||||| |
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| T |
2496348 |
catct |
2496344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 2517070 - 2517022
Alignment:
| Q |
260 |
cttcataggttctaaatttccctaattacaataacaacaatcaaggtct |
308 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2517070 |
cttcataggttttgaatttccctaattacaataacaacaatcaaggtct |
2517022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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