View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_35 (Length: 382)
Name: NF1705_low_35
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7340416 - 7340051
Alignment:
| Q |
1 |
gaagatcaaatggagagaataatgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7340416 |
gaagatcaaatggagagaatcatgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgt |
7340317 |
T |
|
| Q |
101 |
tctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340316 |
tctgtggtatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaac |
7340217 |
T |
|
| Q |
201 |
atcacttccagttgttttcattggtggtaaattagttggttctatggatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagat |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7340216 |
atcacttccagttgttttcattggtgggaaattagttggttctatggatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagat |
7340117 |
T |
|
| Q |
301 |
gctggtgctttatggctttaattagattatgaatttagtttctttgtcatttgagtaacaaataatt |
367 |
Q |
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| T |
7340116 |
gctggtgctttatggctttaattagattatgaa-ttagtttctttgtcatttgagtaacaaataatt |
7340051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 7333627 - 7333304
Alignment:
| Q |
1 |
gaagatcaaatggagagaataatgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7333627 |
gaagatcaaatggagagaataatgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgccatgcaatgaagagtttgt |
7333528 |
T |
|
| Q |
101 |
tctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7333527 |
tctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaacaaatgaaaagagcattgatgaggttacttggaaattcaac |
7333428 |
T |
|
| Q |
201 |
atcacttccagttgttttcattggtggtaaattagttggttctatggatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagat |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| |||||||||||| |
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| T |
7333427 |
atcacttccagttgttttcattggtggcaaattagttggttctatggatagagttttggcttttcatattaatggttctcttgttccacttctcaaagat |
7333328 |
T |
|
| Q |
301 |
gctggtgctttatggctttaatta |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7333327 |
gctggtgctttatggctttaatta |
7333304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 7300048 - 7300371
Alignment:
| Q |
1 |
gaagatcaaatggagagaataatgaggatagctacacaaagtgctgttgtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7300048 |
gaagatcaaatggagagaataatgagcatagcaacacaaagtgctgttgtgatattcagcataagtagttgctgtatgtgtcatgcaatgaagagtttgt |
7300147 |
T |
|
| Q |
101 |
tctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7300148 |
tctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatcctaaagggaaagaaatgaaaagagtattgatgaggttacttggaaattcaac |
7300247 |
T |
|
| Q |
201 |
atcacttccagttgttttcattggtggtaaattagttggttctatggatagagttttggcttttcatatcaatagttcacttattcctcttctcaaagat |
300 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||| |
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| T |
7300248 |
atcacttccggttgttttcattggtggcaaattagttggttctatggatagagttttggcttttcatattaatggttctcttgttcctcttctcaaagat |
7300347 |
T |
|
| Q |
301 |
gctggtgctttatggctttaatta |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7300348 |
gctggtgctttatggctttaatta |
7300371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 319
Target Start/End: Original strand, 8908888 - 8909158
Alignment:
| Q |
49 |
gtgatattcagcataagtagttgttgtatgtgtcatgcaatgaagagtttgttctgtggaatgggagtgaatgcaatggttcatgaagttgatgaagatc |
148 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||||||| || ||||| |||||||||||||||||||||||| || ||||||||| |||||||||||| |
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| T |
8908888 |
gtgattttcagcataagcacttgttgcatgtgtcatgctatcaagagattgttctgtggaatgggagtgaatccagctgttcatgaacttgatgaagatc |
8908987 |
T |
|
| Q |
149 |
ctaaagggaaagaaatgaaaagagcattgatgaggttacttggaaattcaacatcacttccagttgttttcattggtggtaaattagttggttctatgga |
248 |
Q |
| |
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| | ||| |||||| | |||||||| | ||||| | ||||| | ||||| |||| ||||||||||||||||||||| | ||||| ||||||| |
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| T |
8908988 |
caagaggcaaagaacttgaaagagcacttatgagacttcttggtacttcaaatgttgttcctgttgttttcattggtggtaaacttattggtactatgga |
8909087 |
T |
|
| Q |
249 |
tagagttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggcttt |
319 |
Q |
| |
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|||||| |||||| |||||| ||| |||| ||| |||||||||||||| | ||||||||| | ||||||| |
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| T |
8909088 |
tagagtcatggcttgtcatattaatggttctcttgttcctcttctcaaacaagctggtgctctttggcttt |
8909158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 7376327 - 7376255
Alignment:
| Q |
252 |
agttttggcttttcatatcaatagttcacttattcctcttctcaaagatgctggtgctttatggctttaatta |
324 |
Q |
| |
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|||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7376327 |
agttttggcttttcatattaacggttctcttgttcctcttctcaaagatgctggtgctttatggctttaatta |
7376255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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