View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_38 (Length: 375)
Name: NF1705_low_38
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 45402357 - 45402725
Alignment:
| Q |
2 |
cttttgttctattctaatgtcattgttatcactttagacatgctcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
101 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45402357 |
cttttgttctattctaatgtcaatgttatcactttagacatgctcattatgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
45402456 |
T |
|
| Q |
102 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
201 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45402457 |
cacaagttggaaagttgtttcttggcagaggaggtaaaataggtgaactagaaatttctcatattatagggtaaaatattggtggcagggagttaaaaag |
45402556 |
T |
|
| Q |
202 |
tgttgtagtccactttattagattattatatgcacgtagtctaatcataatacaccctactattttttatcataatgctactcacaaacattacctggtc |
301 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45402557 |
tgttgtagtccacattattagattattatatgcacgtagtctaatcgtaatacaccctactattttttatcataatgctactcacaaacattacctggtc |
45402656 |
T |
|
| Q |
302 |
tctatccctgcaacaaaaatcatggatagagcctaaccggatattttataaccttgcagtataatctac |
370 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45402657 |
tctatccttgcaacaaaaatcatggatagagcctaaccggatattttataaccttgcagtataatctac |
45402725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 18812132 - 18812229
Alignment:
| Q |
45 |
tcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggaaaaata |
142 |
Q |
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||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||| || | || | |||| |||||||| || ||| |||||||| |
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| T |
18812132 |
tcgttatgtatgcttatataacttattgtatattggtatttagtagaggttttaattcccatgatgaatagttttttcttggtagtggatgaaaaata |
18812229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 23361945 - 23362196
Alignment:
| Q |
2 |
cttttgttctattctaatgtcattgttatcactttagacatgctcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
101 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23361945 |
cttttgttctattctaatgtaaatgttatcactttagacatgctcgttatgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
23362044 |
T |
|
| Q |
102 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
201 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23362045 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
23362144 |
T |
|
| Q |
202 |
tgttgtagtccactttattagattattatatgcacgtagtctaatcataata |
253 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
23362145 |
tgttgtagtccacattattagattattatatgcacgtagtctaatcgtaata |
23362196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 47351668 - 47351702
Alignment:
| Q |
58 |
ttatataactgattgtatattggtacttagtagag |
92 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
47351668 |
ttatataactgattgtatattggtatttagtagag |
47351702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 19611506 - 19611709
Alignment:
| Q |
2 |
cttttgttctattctaatgtcattgttatcactttagacatgctcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611506 |
cttttgttctattctaatgtcaatgttatcactttagacatgctcattatgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
19611605 |
T |
|
| Q |
102 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611606 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
19611705 |
T |
|
| Q |
202 |
tgtt |
205 |
Q |
| |
|
|||| |
|
|
| T |
19611706 |
tgtt |
19611709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 7600260 - 7600460
Alignment:
| Q |
2 |
cttttgttctattctaatgtcattgttatcactttagacatgctcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7600260 |
cttttgttctattctaatgtcaatgttatcactttagacatgctcattatgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
7600359 |
T |
|
| Q |
102 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7600360 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
7600459 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
7600460 |
t |
7600460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 202
Target Start/End: Complemental strand, 28462262 - 28462062
Alignment:
| Q |
2 |
cttttgttctattctaatgtcattgttatcactttagacatgctcgttgtgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28462262 |
cttttgttctattctaatgtcaatgttatcactttagacatgctcattatgtatgcttatataactgattgtatattggtacttagtagagcttttaatt |
28462163 |
T |
|
| Q |
102 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28462162 |
cacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcagattatagggtaaaatattggtggcagggagttaaaaag |
28462063 |
T |
|
| Q |
202 |
t |
202 |
Q |
| |
|
| |
|
|
| T |
28462062 |
t |
28462062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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