View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_39 (Length: 374)
Name: NF1705_low_39
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_39 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 136 - 374
Target Start/End: Original strand, 31821532 - 31821770
Alignment:
| Q |
136 |
ttgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttac |
235 |
Q |
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| T |
31821532 |
ttgtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttac |
31821631 |
T |
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| Q |
236 |
ttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaa |
335 |
Q |
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| T |
31821632 |
ttcacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaa |
31821731 |
T |
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| Q |
336 |
gattctttacatttttcaaatttcttgttttagtttgat |
374 |
Q |
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| T |
31821732 |
aattctttacatttttcaaatttcttgttttagtttgat |
31821770 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 31821413 - 31821493
Alignment:
| Q |
17 |
tcaaagagatggcaaaaactctgaggttaaggattctgaggaaatccaagaaccagttgatttgaaagacgttgtgttaac |
97 |
Q |
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| T |
31821413 |
tcaaagagatggcaaaaactctgaggttaaggattctgaggaaatccaagaaccggttaatttgaaagacgttgtgttaac |
31821493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 151 - 314
Target Start/End: Original strand, 35688453 - 35688616
Alignment:
| Q |
151 |
aagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatg |
250 |
Q |
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| T |
35688453 |
aagattgtgacttgttcaatggtaaatgggttttagataacgtgacacatcctttgtataaagaagatgaatgtgagtttctcacttctcaagttacatg |
35688552 |
T |
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| Q |
251 |
catgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttct |
314 |
Q |
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| T |
35688553 |
tatgaggaatggaagacgtgattctttgtatcagaattggaaatggcagccaaaagactgttct |
35688616 |
T |
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