View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_4 (Length: 668)

Name: NF1705_low_4
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_4
NF1705_low_4
[»] chr4 (5 HSPs)
chr4 (1-651)||(56008375-56009025)
chr4 (337-383)||(27131687-27131733)
chr4 (337-383)||(27131021-27131067)
chr4 (337-383)||(32754611-32754657)
chr4 (292-374)||(1678682-1678766)
[»] chr2 (2 HSPs)
chr2 (332-396)||(30289796-30289860)
chr2 (118-216)||(9645131-9645229)
[»] scaffold0001 (1 HSPs)
scaffold0001 (332-374)||(398645-398687)
[»] chr8 (3 HSPs)
chr8 (142-216)||(18948845-18948919)
chr8 (337-375)||(3943757-3943795)
chr8 (337-395)||(11556958-11557016)
[»] chr7 (2 HSPs)
chr7 (337-375)||(2811268-2811306)
chr7 (337-374)||(438693-438730)
[»] chr6 (5 HSPs)
chr6 (337-383)||(2468487-2468533)
chr6 (337-415)||(8013852-8013930)
chr6 (337-383)||(2467821-2467867)
chr6 (296-369)||(32862728-32862803)
chr6 (336-372)||(34406440-34406476)
[»] chr3 (7 HSPs)
chr3 (334-376)||(15802351-15802393)
chr3 (339-375)||(28286906-28286942)
chr3 (332-379)||(37817263-37817310)
chr3 (332-397)||(3014913-3014978)
chr3 (338-383)||(17105261-17105306)
chr3 (332-373)||(35724224-35724265)
chr3 (341-409)||(27020404-27020472)
[»] chr5 (1 HSPs)
chr5 (339-383)||(42233186-42233230)
[»] chr1 (2 HSPs)
chr1 (317-398)||(16567278-16567361)
chr1 (339-375)||(31157469-31157505)


Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 56008375 - 56009025
Alignment:
Q  1 ttaaaccagttcaatgctgaaagtgaagcagcagaaatcaaaacaattgttgatgtgaatgaagacttccaaagcaagaaaccaaatgactcgtgcagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  56008375 ttaaaccagttcaatgctgaaagtgaagcagcagaaatcaaaacaattgttgatgtgaatgaagacttccaaagcaagaaaccaaattactcgtgcagtg 56008474  T
Q  101 acgatttggtgtcagattttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaaga 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008475 acgatttggtgtcaggttttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaaga 56008574  T
Q  201 tgaagaaattaaggtaatagtgactgttgtgccccactttgactagctatgtatcaccgacacttgagatagatggcatatccggtgtcaatgtctgaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008575 tgaagaaattaaggtaatagtgactgttgtgccccactttgactagctatgtatcaccgacacttgagatagatggcatatccggtgtcaatgtctgaca 56008674  T
Q  301 cgtgtcagtatcagaaaccaacacgatcctgacacatggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  56008675 cgtgtcagtatcagaaaccaacacgatcctgacacatggttacattcaattactttaattttcttaaattgttaccagtgtcttcaggttagtgtcaacg 56008774  T
Q  401 tcgtgtttggtgtctgtatatgtgtctgcgttaatgtttcacagtctacaagtaggatctctccattttaaaaaagaaatagatgagttcgttactgtag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008775 tcgtgtttggtgtctgtatatgtgtctgcgttaatgtttcacagtctacaagtaggatctctccattttaaaaaagaaatagatgagttcgttactgtag 56008874  T
Q  501 ttttaggtacataaaacacacatttcataaacttgtgacataattatacactaattatactatgatcgtctccatgtaccatactaaactacatatataa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56008875 ttttaggtacataaaacacacatttcataaacttgtgacataattatacactaattatactatgatcgtctccatgtaccatactaaactacatatataa 56008974  T
Q  601 atataatttcagatgttcatgaaaaaagtcgatgcactgaccaagtccatg 651  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  56008975 atataatttcagatgttcatgaaaaaagttgatgcactgaccaagtccatg 56009025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 27131687 - 27131733
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  27131687 tggttacattcaattacttccattttcttaaattattaccaatgtct 27131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 27131021 - 27131067
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    |||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  27131021 tggttacactcaattactttcattgtcttaaattattaccaatgtct 27131067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 32754657 - 32754611
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||    
T  32754657 tggttacattcaatcactttcattttcttaaactattacaagtgtct 32754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 1678766 - 1678682
Alignment:
Q  292 tgtctgacacgtgtcagtatcagaaaccaacacgatcctgacacatg--gttacattcaattactttaattttcttaaattatta 374  Q
    ||||| ||||||||| || ||||||||||||| ||| |  |||||||  |||||||| ||| ||||| ||||||| |||||||||    
T  1678766 tgtctaacacgtgtcggtgtcagaaaccaacaagataccaacacatgtagttacatttaatcactttcattttctcaaattatta 1678682  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 30289860 - 30289796
Alignment:
Q  332 acacatggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtc 396  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||| || || ||||||    
T  30289860 acacatggttacattcaattactcacattttcttaaattattaccagtgtctacatgtcagtgtc 30289796  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 9645131 - 9645229
Alignment:
Q  118 tttttgtatgataggctgcaaagagaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaagatgaagaaattaaggta 216  Q
    ||||| ||||||| ||| |||| ||| ||||| || |||| |||| |||||||||| ||||||||||   ||||  | |||||||||||||| ||||||    
T  9645131 tttttatatgataagcttcaaaaagaagtcatcaatttgaagaagacttgtgaaacaaaagacagtactctgcacaccaaagatgaagaaataaaggta 9645229  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 398687 - 398645
Alignment:
Q  332 acacatggttacattcaattactttaattttcttaaattatta 374  Q
    |||| ||||||||||||||||||| ||||||||||||||||||    
T  398687 acacgtggttacattcaattacttcaattttcttaaattatta 398645  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 18948919 - 18948845
Alignment:
Q  142 gaggtcattaaattgaggaagtcttgtgaaaccaaagacagtaggttgcaagctaaagatgaagaaattaaggta 216  Q
    |||||||| |||||||||||| |||||  ||||||||||||||| ||| | |||||| |||| |||| |||||||    
T  18948919 gaggtcatcaaattgaggaagccttgtagaaccaaagacagtagtttgaatgctaaatatgatgaaactaaggta 18948845  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 3943795 - 3943757
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattac 375  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  3943795 tggttacattcaatcacttttattttcttaaattattac 3943757  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 11556958 - 11557016
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgt 395  Q
    |||||||||||||| |||| |||||||| ||||||||||  |||||| || ||||||||    
T  11556958 tggttacattcaatcacttaaattttctcaaattattacaggtgtctacatgttagtgt 11557016  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 2811306 - 2811268
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattac 375  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2811306 tggttacattcaattacttttattttcttaaattattac 2811268  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 374
Target Start/End: Original strand, 438693 - 438730
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattatta 374  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  438693 tggttacatttaattacttcaattttcttaaattatta 438730  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 2468487 - 2468533
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||    
T  2468487 tggttacattcaattacttccattttcttaaattattaccaatgtct 2468533  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 8013852 - 8013930
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaacgtcgtgtttggtgtct 415  Q
    |||||||||||||| ||||  ||||| | |||||||||| ||||||| || |||||| |||  ||||||||||||||||    
T  8013852 tggttacattcaatcacttatattttttcaaattattactagtgtctacatgttagtatcagtgtcgtgtttggtgtct 8013930  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 2467821 - 2467867
Alignment:
Q  337 tggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    |||||||| ||||||||||| ||| |||||||||||||||| |||||    
T  2467821 tggttacactcaattactttcattgtcttaaattattaccaatgtct 2467867  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 369
Target Start/End: Original strand, 32862728 - 32862803
Alignment:
Q  296 tgacacgtgtcagtatcagaaaccaacacgatcctgacaca--tggttacattcaattactttaattttcttaaat 369  Q
    ||||||||||| | || |||  |||||| ||| ||||||||  |||||||||||||| ||||| ||||||||||||    
T  32862728 tgacacgtgtcggcattagacgccaacaagatactgacacacgtggttacattcaatcactttcattttcttaaat 32862803  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 34406476 - 34406440
Alignment:
Q  336 atggttacattcaattactttaattttcttaaattat 372  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34406476 atggttacattcaatcactttcattttcttaaattat 34406440  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 15802393 - 15802351
Alignment:
Q  334 acatggttacattcaattactttaattttcttaaattattacc 376  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  15802393 acatggttacattcaattacttaaattttctcaaattattacc 15802351  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 28286942 - 28286906
Alignment:
Q  339 gttacattcaattactttaattttcttaaattattac 375  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28286942 gttacattcaattactttcattttcttaaattattac 28286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 37817310 - 37817263
Alignment:
Q  332 acacatggttacattcaattactttaattttcttaaattattaccagt 379  Q
    ||||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  37817310 acacatgattacattcaattactttcattttttaaaattattaccagt 37817263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Complemental strand, 3014978 - 3014913
Alignment:
Q  332 acacatggttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtca 397  Q
    |||||| |||||||||||| | ||||||||| | |||||||||| ||||||| |  ||||||||||    
T  3014978 acacattgttacattcaatcaatttaattttttaaaattattacaagtgtctacgtgttagtgtca 3014913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 17105306 - 17105261
Alignment:
Q  338 ggttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||||    
T  17105306 ggttacattcaatcacttttattttcttaaattattattagtgtct 17105261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 35724265 - 35724224
Alignment:
Q  332 acacatggttacattcaattactttaattttcttaaattatt 373  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||    
T  35724265 acacatgtttacattcaattactttcattttctcaaattatt 35724224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 341 - 409
Target Start/End: Complemental strand, 27020472 - 27020404
Alignment:
Q  341 tacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaacgtcgtgtttg 409  Q
    |||||||||||||||| ||||||| ||| ||||||| |||| | || || ||| |||| ||||||||||    
T  27020472 tacattcaattactttcattttctaaaaatattaccggtgtgtacatgtcagtatcaatgtcgtgtttg 27020404  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 383
Target Start/End: Original strand, 42233186 - 42233230
Alignment:
Q  339 gttacattcaattactttaattttcttaaattattaccagtgtct 383  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||    
T  42233186 gttacatttgattactttaattttcttaaactattaccagtgtct 42233230  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 16567361 - 16567278
Alignment:
Q  317 accaacacgatcctgacacatg--gttacattcaattactttaattttcttaaattattaccagtgtcttcaggttagtgtcaa 398  Q
    ||||||||||| ||||||||||  |||||||||||| | ||  |||||||||||||||| |  |||||| || || ||||||||    
T  16567361 accaacacgatactgacacatgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtcagtgtcaa 16567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 31157469 - 31157505
Alignment:
Q  339 gttacattcaattactttaattttcttaaattattac 375  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  31157469 gttacattcaattactttagttttcttcaattattac 31157505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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