View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_44 (Length: 365)
Name: NF1705_low_44
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_44 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 109488 - 109146
Alignment:
| Q |
15 |
caaggttatcttttggagaaaggttttgaacatgatcgtcacatactaagtttcttcacaagcataggcatcaaaaacctaaacaaggagatatcacaaa |
114 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109488 |
caaggttatcttttgtagaagggttttgaacatgatcgtcacatactaagtttcttcacaagcataggcatcaaaaacctaaacaaggagatatcacaaa |
109389 |
T |
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| Q |
115 |
ttaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
109388 |
ttaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactcgttgccttttct |
109289 |
T |
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| Q |
215 |
ttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaaaaatgtaaatacagaaa |
314 |
Q |
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| T |
109288 |
ttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaaaaatgtaaatacagaaa |
109189 |
T |
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| Q |
315 |
tggacagaatgatgaatcatttttatagtaaccattaacctatg |
358 |
Q |
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| T |
109188 |
tggacagaatgatgaatca-ttttatagtaaccattaacctatg |
109146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 53 - 306
Target Start/End: Complemental strand, 90664 - 90400
Alignment:
| Q |
53 |
tcacatactaagtttcttcacaagcataggcatcaaaaacc-----------taaacaaggagatatcacaaattaaaagttgacgaacttcttttcttt |
141 |
Q |
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| T |
90664 |
tcacatactgagttttttcacaagcataggcatcaaaagccatgtcatcaactaaacaaggagataccacaaattaaaggttggcgaacttcttttcttt |
90565 |
T |
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| Q |
142 |
caaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggcacatat |
241 |
Q |
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| T |
90564 |
caaactttcaacagtctccttgatgctcacttccaaaggagtatattcaagtcccaagcttttcgccttttctttggaaacctgatatataggcacatat |
90465 |
T |
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| Q |
242 |
ggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatattagaaaaatgtaaa |
306 |
Q |
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| T |
90464 |
ggcttatcgtccgcacacctggtaacatagttgacaaagtgaaaacgatattagaaaaatctaaa |
90400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 2709120 - 2708966
Alignment:
| Q |
103 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttcct--------tgatgctcacttccaaaggagtatattcaattc |
194 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||| ||||||||| |||| ||||||||| |
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| T |
2709120 |
agatatcacaaattaaaagttggcgaacttcttttctttcaaattttccacagtctcctactctccttgatgctgacttccaaaagagttaattcaattc |
2709021 |
T |
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| Q |
195 |
ccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatc |
249 |
Q |
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|||| ||||| ||||||||||||||| |||||||||||||| || |||||||| |
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| T |
2709020 |
ccaagctcttgaccttttctttggaaacctgatatgtaggcatgtacggcttatc |
2708966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 90366 - 90330
Alignment:
| Q |
298 |
aaatgtaaatacagaaatggacagaatgatgaatcat |
334 |
Q |
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| T |
90366 |
aaatgtaaatacagaaacggacagaatgatgaatcat |
90330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 25936549 - 25936423
Alignment:
| Q |
110 |
acaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgcct |
209 |
Q |
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||||||||||||||||||| ||| || ||| | || ||||| ||||| ||||||| | | |||||||||| |||| | || |||||||||||||| |||| |
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| T |
25936549 |
acaaattaaaagttgacgatctttttctctctgaagctttccacagtctccttgagggtgacttccaaagaagtaaactcgattcccaaactcttagcct |
25936450 |
T |
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| Q |
210 |
tttctttggaaaactgatatgtaggca |
236 |
Q |
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|||| || |||| ||||||||| |||| |
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| T |
25936449 |
tttccttagaaatctgatatgttggca |
25936423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 26105151 - 26105073
Alignment:
| Q |
158 |
tccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggca |
236 |
Q |
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| T |
26105151 |
tccttgaggctgatttccaaaggagtaaactcgattccaaagctcttggccttttccttggaaatctgatatgttggca |
26105073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 272
Target Start/End: Complemental strand, 6089 - 5922
Alignment:
| Q |
105 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
204 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
6089 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
5990 |
T |
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| Q |
205 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
272 |
Q |
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| T |
5989 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
5922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 272
Target Start/End: Complemental strand, 29550416 - 29550249
Alignment:
| Q |
105 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
204 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
29550416 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
29550317 |
T |
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| Q |
205 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
272 |
Q |
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| T |
29550316 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
29550249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 29556792 - 29556747
Alignment:
| Q |
186 |
attcaattcccaaactctttgccttttctttggaaaactgatatgt |
231 |
Q |
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| T |
29556792 |
attcaattcccaacgtctttgccttttctttggaaatctgaaatgt |
29556747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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