View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_46 (Length: 362)
Name: NF1705_low_46
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 155 - 344
Target Start/End: Original strand, 27513449 - 27513638
Alignment:
| Q |
155 |
ataccactttctttgcgaggttgcaagacatttctacaatatttttaggtaagttttagttccccaacacaagttgggtccttgggattagtggcacaag |
254 |
Q |
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| T |
27513449 |
ataccactttctttgcgaggttgcaagacatttctacaatatttttaggtaaggtttaggtccccaacacaagttgggtccttgggattagtgacacaag |
27513548 |
T |
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| Q |
255 |
tagatactttgggtacccacttcataatgcctcttggaactaaatttttcataacatggcagtttggtgtcgtatgcccaatttctctac |
344 |
Q |
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| T |
27513549 |
tagatactttgggtacccacttcataatgcctcttggaactaaatttttcataacatggcagtttggtgtggtatgcccaatttctctac |
27513638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 27513377 - 27513442
Alignment:
| Q |
28 |
aaacacccttacctaagatcttactttggttgttatcaccataggagacatgccctttttctttcc |
93 |
Q |
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| T |
27513377 |
aaacacccttacctaagatcttacattggttgttatcaccataagagacataccctttttctttcc |
27513442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 14985372 - 14985500
Alignment:
| Q |
215 |
tccccaacacaagttgggtccttgggattagtggcacaagtagatactttgggtacccacttcataatgcctcttggaactaaatttttcataacatggc |
314 |
Q |
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| T |
14985372 |
tccccaacacaagttgggtccttgggaatagtaacaaaggtagatactttggatactcatatcataatgccttttggaattaaaatctttattgcatggg |
14985471 |
T |
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| Q |
315 |
agtttggtgtcgtatgcccaatttctcta |
343 |
Q |
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| T |
14985472 |
aatgaggagtggtatgcccaatttctcta |
14985500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 15414983 - 15415111
Alignment:
| Q |
215 |
tccccaacacaagttgggtccttgggattagtggcacaagtagatactttgggtacccacttcataatgcctcttggaactaaatttttcataacatggc |
314 |
Q |
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| T |
15414983 |
tccccaacacaagttgggtccttgggaatagtaacaaaggtagatactttggatactcatatcataatgccttttggaattaaaatctttattgcatggg |
15415082 |
T |
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| Q |
315 |
agtttggtgtcgtatgcccaatttctcta |
343 |
Q |
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| T |
15415083 |
aatgaggagtggtatgcccaatttctcta |
15415111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 8834685 - 8834636
Alignment:
| Q |
199 |
ttaggtaagttttagttccccaacacaagttgggtccttgggattagtgg |
248 |
Q |
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| T |
8834685 |
ttaggtaaattttaggtccccaacataagttgggtccttgggattagtgg |
8834636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 29 - 306
Target Start/End: Original strand, 20578977 - 20579253
Alignment:
| Q |
29 |
aacacccttacctaagatcttactttggttgttatcaccataggagacatgccctttttctttccatgtgaaatcaatgaacattgaggtgtctcccgtc |
128 |
Q |
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| T |
20578977 |
aacacccttacctaagatcttaccttggttgttatcgtcgtaggagacaaatcctcattccttcattgtaaagtcaagaaacatggaggtgtcccccgtc |
20579076 |
T |
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| Q |
129 |
atatatcttgagcaaccgctatccgaataccactttctttgcgaggttgcaagacatttctacaatatttttaggtaagttttagttccccaacacaagt |
228 |
Q |
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| T |
20579077 |
atatgccttgagcaaccgctatctagataccactttattctagaggttgcaaggcattcctacaaatgatttaggtaagattcaggtccccaacacaagt |
20579176 |
T |
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| Q |
229 |
tgggtccttgggattagtggcacaagtagatactttgggtacccacttcataatgcctcttggaactaaatttttcat |
306 |
Q |
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| T |
20579177 |
tgggtccttgggattagtgacaaaggtagatagtttgggtacccacatcataatg-cttttggaactaagattttcat |
20579253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 29 - 294
Target Start/End: Complemental strand, 19767481 - 19767227
Alignment:
| Q |
29 |
aacacccttacctaagatcttactttggttgttatcaccataggagacatgccctttttctttccatgtgaaatcaatgaacattgaggtgtctcccgtc |
128 |
Q |
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| T |
19767481 |
aacacccttacctaagatcttaccttggttgttatcctcataggagacaaaccatttttcctttctcgtaaagtcaataaacatttaggtgtcccccgtc |
19767382 |
T |
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| Q |
129 |
atatatcttgagcaaccgctatccgaataccactttctttgcgaggttgcaagacatttctacaatatttttaggtaagttttagttccccaacacaagt |
228 |
Q |
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| T |
19767381 |
atatgtcttgagcaacctctatctaaatattactttctttgcgaggttgcaaggcattcctacaa-----------atcatttaggtccccaacacaagt |
19767293 |
T |
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| Q |
229 |
tgggtccttgggattagtggcacaagtagatactttgggtacccacttcataatgcctcttggaac |
294 |
Q |
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| T |
19767292 |
tgggtccttgggattagtgacaaaggtagacaatttaggtacccacatcataatgccttttggaac |
19767227 |
T |
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