View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_5 (Length: 644)

Name: NF1705_low_5
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_5
NF1705_low_5
[»] chr3 (15 HSPs)
chr3 (77-220)||(23222147-23222281)
chr3 (484-619)||(23231321-23231456)
chr3 (269-367)||(8936054-8936152)
chr3 (498-618)||(23235214-23235334)
chr3 (272-341)||(43178610-43178679)
chr3 (268-340)||(1294907-1294979)
chr3 (265-340)||(42388741-42388816)
chr3 (8-56)||(23222282-23222330)
chr3 (265-339)||(36563060-36563134)
chr3 (261-341)||(50175353-50175433)
chr3 (269-336)||(26841307-26841373)
chr3 (265-336)||(36545183-36545254)
chr3 (265-339)||(42411037-42411111)
chr3 (269-335)||(52397399-52397465)
chr3 (569-618)||(23239852-23239901)
[»] chr5 (13 HSPs)
chr5 (246-390)||(21067598-21067743)
chr5 (246-389)||(28988341-28988486)
chr5 (268-339)||(19187144-19187215)
chr5 (270-340)||(39753317-39753387)
chr5 (261-336)||(38282494-38282569)
chr5 (266-339)||(36603697-36603770)
chr5 (261-336)||(1179945-1180020)
chr5 (291-367)||(14122928-14123004)
chr5 (268-365)||(24233180-24233277)
chr5 (265-383)||(36974030-36974148)
chr5 (265-316)||(6677086-6677137)
chr5 (265-315)||(12383956-12384006)
chr5 (267-339)||(39031668-39031739)
[»] chr1 (10 HSPs)
chr1 (261-390)||(45484990-45485119)
chr1 (246-340)||(32022615-32022709)
chr1 (268-390)||(48611679-48611802)
chr1 (265-390)||(19940549-19940674)
chr1 (246-339)||(34663092-34663185)
chr1 (265-336)||(4941199-4941270)
chr1 (265-339)||(1408620-1408694)
chr1 (261-336)||(40605156-40605228)
chr1 (247-322)||(48768286-48768361)
chr1 (265-339)||(46289803-46289877)
[»] chr8 (8 HSPs)
chr8 (265-388)||(40995773-40995897)
chr8 (246-390)||(9799200-9799345)
chr8 (246-391)||(7222798-7222939)
chr8 (265-367)||(15111845-15111947)
chr8 (269-336)||(45397512-45397578)
chr8 (265-339)||(12000143-12000217)
chr8 (275-341)||(885706-885774)
chr8 (261-341)||(27415255-27415335)
[»] chr4 (9 HSPs)
chr4 (265-336)||(27756471-27756542)
chr4 (267-390)||(19328824-19328948)
chr4 (265-336)||(3427867-3427938)
chr4 (267-341)||(3913655-3913729)
chr4 (278-336)||(25474657-25474715)
chr4 (265-336)||(43159856-43159927)
chr4 (278-339)||(4687364-4687425)
chr4 (272-336)||(20032924-20032989)
chr4 (272-328)||(46871305-46871361)
[»] scaffold0272 (1 HSPs)
scaffold0272 (246-386)||(6089-6230)
[»] chr2 (10 HSPs)
chr2 (268-339)||(9521066-9521137)
chr2 (267-388)||(16634422-16634544)
chr2 (272-336)||(3037421-3037485)
chr2 (246-399)||(27322731-27322882)
chr2 (261-335)||(6983185-6983259)
chr2 (267-340)||(9116404-9116477)
chr2 (289-340)||(15371435-15371486)
chr2 (266-307)||(24138011-24138052)
chr2 (265-322)||(25627402-25627459)
chr2 (353-389)||(35501506-35501542)
[»] chr7 (6 HSPs)
chr7 (246-341)||(30486950-30487045)
chr7 (268-340)||(47903887-47903957)
chr7 (265-336)||(42468949-42469020)
chr7 (265-339)||(37720555-37720629)
chr7 (265-339)||(28710392-28710466)
chr7 (269-341)||(15972134-15972206)
[»] scaffold0316 (1 HSPs)
scaffold0316 (265-336)||(1286-1357)
[»] chr6 (2 HSPs)
chr6 (266-336)||(17170676-17170746)
chr6 (350-390)||(7246638-7246678)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 23222281 - 23222147
Alignment:
Q  77 aaaaataattagtaaagaggttggggcagaaagcaagttggatgtcgtgggaaattaaaggcttgttctgaattagcaaaattaattagtatatgtcgtt 176  Q
    |||||||||||||||||| |||||||||| ||||| |||||||           |||||||||||||||| |||||||||| ||||||||||||||||||    
T  23222281 aaaaataattagtaaagaagttggggcaggaagcaggttggat-----------ttaaaggcttgttctggattagcaaaaataattagtatatgtcgtt 23222193  T
Q  177 ttgtttaa--tgtggacctatggatatgattgattgtataaattta 220  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  23222192 ttgtttaatgtgtggacctatggatatgattgattgtataaattta 23222147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 484 - 619
Target Start/End: Complemental strand, 23231456 - 23231321
Alignment:
Q  484 aacccttccatttcaaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatg 583  Q
    ||||||||||||  ||||| |||||||||||||||||||| | || || |||||||   | ||||||||||||| ||||| || |||||||| | |||||    
T  23231456 aacccttccattagaaaatccaaaatattgccttcttttaaaattcaaggagaatgtggttttgttaaatatggctttggctacgatcatgtgaatgatg 23231357  T
Q  584 tttacaaggtggttgctgttttttcctatgattgtg 619  Q
    ||||||||||||||||||||||||||||| ||||||    
T  23231356 tttacaaggtggttgctgttttttcctattattgtg 23231321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 269 - 367
Target Start/End: Complemental strand, 8936152 - 8936054
Alignment:
Q  269 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 367  Q
    |||||||||||||||| ||||| |||||||  || ||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||    
T  8936152 aagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaacttccttttttaagtttccttaaccagtgcc 8936054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 498 - 618
Target Start/End: Complemental strand, 23235334 - 23235214
Alignment:
Q  498 aaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatgtttacaaggtggtt 597  Q
    |||||||||||||||||||||||||| | || || |||||||   | | ||||||||||| ||||| || |||||||| |  |||||||||||| | |||    
T  23235334 aaaattcaaaatattgccttcttttaaaattcaaggagaatgtggtttagttaaatatggctttggctacgatcatgtgaaggatgtttacaagatcgtt 23235235  T
Q  598 gctgttttttcctatgattgt 618  Q
    ||||||||||||||| |||||    
T  23235234 gctgttttttcctattattgt 23235214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 272 - 341
Target Start/End: Original strand, 43178610 - 43178679
Alignment:
Q  272 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||    
T  43178610 tattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaacttcc 43178679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 1294979 - 1294907
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    ||||||||||||||||||||||| ||||| || || | || |||||||| |||||||||||||||||||||||    
T  1294979 taagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaacttc 1294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 42388741 - 42388816
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    |||||||||||  |||| |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  42388741 tagtaagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaacttc 42388816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 23222330 - 23222282
Alignment:
Q  8 attatactcctggtcatggatgatcgggaacttatcaattatgcttagc 56  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  23222330 attatgctcctggtcatggatgatcgggaacttatcaattatgctcagc 23222282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 36563060 - 36563134
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||||||||||  |||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  36563060 tagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 36563134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 50175353 - 50175433
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    ||||||| ||||||| ||||| |||||||||||||||||  | |||| |||||||| ||||| ||| | ||||||| ||||    
T  50175353 aatatagaaagtattgcattggaatttgtgttgtcaactcctaaaaaacataaaaattgttatttttactttaaaatttcc 50175433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 26841373 - 26841307
Alignment:
Q  269 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||| ||||||||||||||| ||||||||| | |||||| |||||||||||||| ||| | |||||||    
T  26841373 aagttttacattgaaatttgggttgtcaac-tcttaaaatcataaaaagtgttatttttactttaaaa 26841307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 36545254 - 36545183
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||||  |||| || ||||| ||||||||  | ||||||||||||||||||| ||||| |||||||    
T  36545254 tagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 36545183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 42411037 - 42411111
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||||||||| ||||| || ||| |||||||| |||| |||| |||||||| ||||| ||| || |||||||||    
T  42411037 tagtaagtattgcattggaacttgcgttgtcaagttttcaaaaacataaaaaatgttatttttatcttaaaactt 42411111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 52397399 - 52397465
Alignment:
Q  269 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 335  Q
    ||||||||||||  |||||||||||||||||| | ||||| ||||||  || || ||||||||||||    
T  52397399 aagtattacattagaatttgtgttgtcaacttctaaaaagtataaaagttgatattttcattttaaa 52397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 23239901 - 23239852
Alignment:
Q  569 atcatgtaattgatgtttacaaggtggttgctgttttttcctatgattgt 618  Q
    ||||||||||||||||||||||||| ||| || |||| | ||||||||||    
T  23239901 atcatgtaattgatgtttacaaggtcgtttctattttgtgctatgattgt 23239852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 21067598 - 21067743
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 345  Q
    |||||||| ||||  ||| |||||||||||||||||||| ||||||||||| || || |||||||||||||||  |||||||||||||||||||||        
T  21067598 ctggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttcctttt 21067697  T
Q  346 nnnagtttccttaaccagtgcctcgga-gcaccggttaacatgacc 390  Q
       ||||||||||||||||||  |||| ||| ||||||||||||||    
T  21067698 ttgagtttccttaaccagtgcaccggaggcatcggttaacatgacc 21067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 246 - 389
Target Start/End: Complemental strand, 28988486 - 28988341
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcata--aaaagtgttactttcattttaaaacttccnn 343  Q
    |||||||| ||||  ||| | |||| |||||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||||||| ||||      
T  28988486 ctggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaatttcctt 28988387  T
Q  344 nnnnnagtttccttaaccagtgcctcggagcaccggttaacatgac 389  Q
         ||||||||||||||||||| ||  |||  ||||||||||||    
T  28988386 tttttagtttccttaaccagtgccccgcggcaatggttaacatgac 28988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 19187144 - 19187215
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||    
T  19187144 taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt 19187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 39753387 - 39753317
Alignment:
Q  270 agtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaacttc 39753317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 38282494 - 38282569
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||| ||| ||||||||| |||||||||||||||||| |||||||  ||||||||||||| |||||||||||||    
T  38282494 aatataataaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 36603770 - 36603697
Alignment:
Q  266 agtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||||||||| ||||| || |||||||||||||| || |||| |||||||||||| ||||||||||||||||||    
T  36603770 agtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaactt 36603697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 1179945 - 1180020
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||| |||||||||||||||| || |||||||||||| | |||| |||||||||||||| ||| |||||||||    
T  1179945 aatatagaaagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaa 1180020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 14122928 - 14123004
Alignment:
Q  291 ttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 367  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||    
T  14122928 ttgtcaactattcaaaagcatataaagtgttactttcattttaaaacttccttcttttagtttccttaaccagtgcc 14123004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 24233180 - 24233277
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg 365  Q
    |||||||| ||||| || ||||| ||||||||||| ||||  |||||||||||||||||||| || ||||||||       |||||||||||||||||    
T  24233180 taagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaacttcctttttttagtttccttaaccagtg 24233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 36974148 - 36974030
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 364  Q
    |||||| |||| ||||  || |||||||||||||| || |||| ||||||| |||||| ||||||||||||| ||||       ||||| |||| |||||    
T  36974148 tagtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaatttccttttttaagttt-cttatccagt 36974050  T
Q  365 gcctcgga-gcaccggttaa 383  Q
    |||||||| |||||||||||    
T  36974049 gcctcggaggcaccggttaa 36974030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 6677086 - 6677137
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaa 316  Q
    |||||||| ||| ||||||||||||||| |||||| || |||||||||||||    
T  6677086 tagtaagttttatattgaaatttgtgttctcaactcttcaaaagcataaaaa 6677137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 12384006 - 12383956
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaa 315  Q
    |||||||||||  ||||||||||||||||||||||  | ||||||||||||    
T  12384006 tagtaagtattgaattgaaatttgtgttgtcaactcctcaaaagcataaaa 12383956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 39031668 - 39031739
Alignment:
Q  267 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||| ||||||||| |||||| || |||||| | || |||| |||||||| | ||||||||||||||||||||    
T  39031668 gtaaatattacattaaaatttatgctgtcaattattcaaaa-cataaaaaatattactttcattttaaaactt 39031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 261 - 390
Target Start/End: Complemental strand, 45485119 - 45484990
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaac 360  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||| |||        || |||||||||    
T  45485119 aatatagtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaatttcttttttttaggttccttaac 45485020  T
Q  361 cagtgcctcggagcaccggttaacatgacc 390  Q
    ||||||| || |||||||||||||||||||    
T  45485019 cagtgccccgaagcaccggttaacatgacc 45484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 32022709 - 32022615
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    |||||||| ||||  ||| | |||||||||||||||||| ||||  ||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  32022709 ctggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaagtattacttttattttaaaacttc 32022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 48611802 - 48611679
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 367  Q
    |||||| ||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||  |       |||||||||||||||||||    
T  48611802 taagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaactatctttttttagtttccttaaccagtgcc 48611703  T
Q  368 tcggag-caccggttaacatgacc 390  Q
     || || |||||||||||||||||    
T  48611702 ccgtagacaccggttaacatgacc 48611679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 265 - 390
Target Start/End: Complemental strand, 19940674 - 19940549
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 364  Q
    ||||||||||| |||||||| || || ||||||||  | ||||||||||||||||||| ||||| |||||||||| |       ||||||||||||||||    
T  19940674 tagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc-ctttttagtttccttaaccagt 19940576  T
Q  365 gcctc-ggagcaccggttaacatgacc 390  Q
    ||| | || ||||||||||||||||||    
T  19940575 gccccgggggcaccggttaacatgacc 19940549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 34663092 - 34663185
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||||||| ||||  ||| | |||||||||  |||| || ||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  34663092 ctggttaaggagtcaaatgtggtaagtattgtattggaacttgtactgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 4941270 - 4941199
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||| |||| |||||||| ||||||||||||||  | ||||||||||||||||||| ||| |||||||||    
T  4941270 tagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 1408620 - 1408694
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||||| | |||||||| || |||||||||||||| || |||| |||||||||| ||| ||||||||||||||||    
T  1408620 tagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt 1408694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 40605228 - 40605156
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||||||||| |||||||||| |||||   |||| | |||| |||||||||||||| |||||||||||||    
T  40605228 aatatagtaagtattatattgaaatttctgttg---acttctcaaaaacataaaaagtgttaatttcattttaaaa 40605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 48768286 - 48768361
Alignment:
Q  247 tggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgtta 322  Q
    |||||||||| |  |||||||||  ||||| |||| || |||||||||||||| |||||||| |||||||||||||    
T  48768286 tggttaaagaatcaaatatagtagatattatattggaacttgtgttgtcaactctttaaaagtataaaaagtgtta 48768361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 46289877 - 46289803
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||||||||| ||||| || || || |||||||  || |||| |||||||||||||| ||||| ||||||||||    
T  46289877 tagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaactt 46289803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 40995897 - 40995773
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 364  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||       |||||| |||||| ||    
T  40995897 tagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttccttttcttagtttcattaaccggt 40995798  T
Q  365 gcctcgga-gcaccggttaacatga 388  Q
    ||||| || |||| |||||||||||    
T  40995797 gcctcagaggcactggttaacatga 40995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 246 - 390
Target Start/End: Complemental strand, 9799345 - 9799200
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 345  Q
    |||||||| ||||  ||| | ||||||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||||||| |||| |        
T  9799345 ctggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgttacctttattttaagactttcaatt 9799246  T
Q  346 nnnagtttccttaaccagtgcctc-ggagcaccggttaacatgacc 390  Q
       ||||||||||||||||||| | || |||| |||||||||||||    
T  9799245 tttagtttccttaaccagtgccacgggggcactggttaacatgacc 9799200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 7222939 - 7222798
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 345  Q
    |||||||| ||||  |||||| ||| ||||||||||||||||||| |||  ||| || |||| |||||||||||||||||| ||||||||| || |        
T  7222939 ctggttaaggagttaaatataataaatattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaattttc--tt 7222844  T
Q  346 nnnagtttccttaaccagtgcctcggagcaccggttaacatgacct 391  Q
       |||||||||||| |||| || |  |||||||||||||||||||    
T  7222843 tttagtttccttaactagtgtctggatgcaccggttaacatgacct 7222798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 15111947 - 15111845
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 364  Q
    |||||||| ||| ||| ||| ||||||||||||||  | ||||  ||||||||||||| ||||||||||||| |||        ||||||||||||||||    
T  15111947 tagtaagttttatattaaaacttgtgttgtcaactcctaaaaaatataaaaagtgttattttcattttaaaatttcttttttttagtttccttaaccagt 15111848  T
Q  365 gcc 367  Q
    |||    
T  15111847 gcc 15111845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 45397512 - 45397578
Alignment:
Q  269 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||||||||||||||| |||||||||||| | |||||  | |||||||||| ||| |||||||||    
T  45397512 aagtattacattgaaatttttgttgtcaacttctaaaaag-tttaaaagtgttatttttattttaaaa 45397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 12000217 - 12000143
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||||||| || ||||| |||||||| ||||||| | | ||||||||||||| | ||| ||||| ||||||||||    
T  12000217 tagtaagtgttgcattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaactt 12000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 885706 - 885774
Alignment:
Q  275 tacattgaaatttgtgttgtcaactttttaaaagcat--aaaaagtgttactttcattttaaaacttcc 341  Q
    ||||||| |||||||||||||||||  ||||||| ||  ||||| ||||| ||||||||||||| ||||    
T  885706 tacattggaatttgtgttgtcaactccttaaaagaataaaaaaaatgttattttcattttaaaatttcc 885774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 27415335 - 27415255
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    ||||||| ||| |||||||||||| || |||||||||||| | ||||  || |||||||||| ||| | ||||||| ||||    
T  27415335 aatataggaagcattacattgaaacttatgttgtcaacttctcaaaaatatcaaaagtgttatttttactttaaaatttcc 27415255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 27756471 - 27756542
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  27756471 tagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 19328824 - 19328948
Alignment:
Q  267 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg- 365  Q
    ||||||||||||||| || ||||| | |||||| || ||||| |||||||||||||||||||||||||||||||        |||||||||||||||||     
T  19328824 gtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaacttcatttttttagtttccttaaccagtgc 19328923  T
Q  366 cctcggagcaccggttaacatgacc 390  Q
    || ||| ||||||||||||||||||    
T  19328924 ccccggggcaccggttaacatgacc 19328948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 3427867 - 3427938
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||||  ||||||| |||||||||||||| || |||| |||||||||||||| |||||||||||||    
T  3427867 tagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 341
Target Start/End: Original strand, 3913655 - 3913729
Alignment:
Q  267 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    ||||||||||| ||| || ||||||||| |||| || ||||| ||||||||||||||||||||||||||| ||||    
T  3913655 gtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaaattcc 3913729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 25474715 - 25474657
Alignment:
Q  278 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaa 25474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 43159856 - 43159927
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||||||| ||||| || ||||||||||||||  | |||| | |||||||||||| |||||||||||||    
T  43159856 tagtaagtattgcattggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaa 43159927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 4687425 - 4687364
Alignment:
Q  278 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    |||| |||||||| | ||||||| | ||||||||||||||||||| ||| | ||||||||||    
T  4687425 attggaatttgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaactt 4687364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 20032924 - 20032989
Alignment:
Q  272 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttact-ttcattttaaaa 336  Q
    |||||||||| || |||| ||||||||| || |||| |||||||||||||| | ||||||||||||    
T  20032924 tattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaa 20032989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 46871305 - 46871361
Alignment:
Q  272 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttca 328  Q
    ||||||||||||| ||||||||||||||  |  |||  |||||||||||||||||||    
T  46871305 tattacattgaaacttgtgttgtcaactcctcgaaaatataaaaagtgttactttca 46871361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 6089 - 6230
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 345  Q
    |||||||| ||||  ||| ||||||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||| |        
T  6089 ctggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaactttctttt 6188  T
Q  346 nnnagtttccttaaccagtgcctc-ggagcaccggttaacat 386  Q
       ||||||||||||| ||||| | ||| |||||||||||||    
T  6189 tttagtttccttaaccggtgcccctggaacaccggttaacat 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 9521137 - 9521066
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  9521137 taagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 9521066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 267 - 388
Target Start/End: Original strand, 16634422 - 16634544
Alignment:
Q  267 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgc 366  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||| |||  |||||||||||||        ||||||||||| ||||||    
T  16634422 gtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaacttcattttattagtttccttaatcagtgc 16634521  T
Q  367 ctcgga-gcaccggttaacatga 388  Q
      |||| ||||||||||||||||    
T  16634522 tccggaggcaccggttaacatga 16634544  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 3037421 - 3037485
Alignment:
Q  272 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||| |||||||||||||||||  ||||||| ||||||||||||||||| |||||||||    
T  3037421 tattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaa 3037485  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 27322731 - 27322882
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 345  Q
    |||||||| ||||  ||| | ||||||||| ||||| || ||||| |||||||| || ||||||||||||||| ||||||| |||||  |||||||        
T  27322731 ctggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttattttcgaacttcctttt 27322830  T
Q  346 nnnagtttccttaaccagtgcctcggagcaccggttaacatgacctaataaatt 399  Q
       ||||||||||||||||||| ||   ||| |||||||||||||  |||||||    
T  27322831 tttagtttccttaaccagtgccccg--acactggttaacatgaccctataaatt 27322882  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 6983259 - 6983185
Alignment:
Q  261 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 335  Q
    ||||||| ||||||||||||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||    
T  6983259 aatatagaaagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcactttaaa 6983185  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 9116477 - 9116404
Alignment:
Q  267 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    |||| |||| ||||| || ||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||    
T  9116477 gtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaacttc 9116404  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 15371486 - 15371435
Alignment:
Q  289 tgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  15371486 tgttgttaactttttaaaaggataaaaagtgttattttcactttaaaacttc 15371435  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 24138011 - 24138052
Alignment:
Q  266 agtaagtattacattgaaatttgtgttgtcaactttttaaaa 307  Q
    ||||||||||  ||||||||||||||||||||||| ||||||    
T  24138011 agtaagtattgtattgaaatttgtgttgtcaacttcttaaaa 24138052  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 25627402 - 25627459
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgtta 322  Q
    |||||||||||  ||||||| ||||||||||||||  | |||| ||||||||||||||    
T  25627402 tagtaagtattttattgaaacttgtgttgtcaactcctcaaaaacataaaaagtgtta 25627459  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 35501506 - 35501542
Alignment:
Q  353 tccttaaccagtgcctcggagcaccggttaacatgac 389  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35501506 tccttaaccagtgctccggagcaccggttaacatgac 35501542  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 30487045 - 30486950
Alignment:
Q  246 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    |||||||| ||||  ||| | ||||||||| ||||||||||||||  |||||||||| ||||  ||||||| ||||||||| ||||||||||||||    
T  30487045 ctggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaacttcc 30486950  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 47903957 - 47903887
Alignment:
Q  268 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 340  Q
    |||||||||||||| |||||||||||||||||  | |||| |||  ||||||||| |||||||||||||||||    
T  47903957 taagtattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaacttc 47903887  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 42469020 - 42468949
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    |||||||||||| ||||||| ||||| |||| ||| ||||| | |||||||||||||  |||||||||||||    
T  42469020 tagtaagtattaaattgaaacttgtgatgtccactctttaataacataaaaagtgttgttttcattttaaaa 42468949  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 37720629 - 37720555
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||||||||| ||||| ||  |||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  37720629 tagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 37720555  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 28710466 - 28710392
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 339  Q
    ||||||||||||||||| |||||||| ||  ||||  | |||| |||||||| ||||| ||||| ||||||||||    
T  28710466 tagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaactt 28710392  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 15972206 - 15972134
Alignment:
Q  269 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 341  Q
    |||||||||||||||| |||||||||||| |  | ||||  ||||||||| ||| ||||| ||||||| ||||    
T  15972206 aagtattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaatttcc 15972134  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 1286 - 1357
Alignment:
Q  265 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||||||| |||||  | ||||||||||||||  | ||||||||||||| ||||| |||||||||||||    
T  1286 tagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaa 1357  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 17170746 - 17170676
Alignment:
Q  266 agtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 336  Q
    ||||||| |||||||  ||||| |||||| || |||||||||  ||||||||||||| ||| |||||||||    
T  17170746 agtaagttttacattagaatttatgttgttaattttttaaaaatataaaaagtgttatttttattttaaaa 17170676  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 390
Target Start/End: Original strand, 7246638 - 7246678
Alignment:
Q  350 gtttccttaaccagtgcctcggagcaccggttaacatgacc 390  Q
    |||||||||||||||||| ||||||||  ||||||||||||    
T  7246638 gtttccttaaccagtgccccggagcactagttaacatgacc 7246678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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