View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_51 (Length: 340)
Name: NF1705_low_51
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_51 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 322
Target Start/End: Complemental strand, 5088 - 4781
Alignment:
| Q |
15 |
cataggcaaacgaggcaacgacggtagacgatataatatgccaactgcctcagaagtagcagccttggtggttggtgattatgatgccgcaaacaccgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5088 |
cataggcaaacgaggcaacgacggtagacgatataatatgccaactacctcagaagtagcagccttggtggttggtgattatgatgccgcaaacaccgag |
4989 |
T |
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| Q |
115 |
agagatgtcgtcgttgaagaacggtctggattactaaagcgtatctccgtgtttgaaccatcttacttaccgctgcaataccccttgatcttcacaagag |
214 |
Q |
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| T |
4988 |
agagatgtcgtcgttgaagaacggtctggattactaaagcgtatctccgtgtttgaaccatcttacttaccgctgcaataccccttgatcttcacaagag |
4889 |
T |
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| Q |
215 |
gagaaaatggatttcgacgtgatattcgatttaccaataggccaaccaacacttcaataaaaagattgtttgtttccatgaaagaatggtttgcttacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4888 |
gagaaaatggatttcgacgtgatattcgatttaccaataggccaaccaacacttcaataaaaagattgtttgtttccatgaaagaatggtttgcttacac |
4789 |
T |
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| Q |
315 |
tatccaac |
322 |
Q |
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| T |
4788 |
tatccaac |
4781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 15457103 - 15457410
Alignment:
| Q |
15 |
cataggcaaacgaggcaacgacggtagacgatataatatgccaactgcctcagaagtagcagccttggtggttggtgattatgatgccgcaaacaccgag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457103 |
cataggcaaacgaggcaacgacggtagacgatataatatgccaactacctcagaagtagcagccttggtggttggtgattatgatgccgcaaacaccgag |
15457202 |
T |
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| Q |
115 |
agagatgtcgtcgttgaagaacggtctggattactaaagcgtatctccgtgtttgaaccatcttacttaccgctgcaataccccttgatcttcacaagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457203 |
agagatgtcgtcgttgaagaacggtctggattactaaagcgtatctccgtgtttgaaccatcttacttaccgctgcaataccccttgatcttcacaagag |
15457302 |
T |
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| Q |
215 |
gagaaaatggatttcgacgtgatattcgatttaccaataggccaaccaacacttcaataaaaagattgtttgtttccatgaaagaatggtttgcttacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15457303 |
gagaaaatggatttcgacgtgatattcgatttaccaataggccaaccaacacttcaataaaaagattgtttgtttccatgaaagaatggtttgcttacac |
15457402 |
T |
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| Q |
315 |
tatccaac |
322 |
Q |
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|||||||| |
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| T |
15457403 |
tatccaac |
15457410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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