View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_52 (Length: 335)
Name: NF1705_low_52
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 39385312 - 39384986
Alignment:
| Q |
1 |
aacatctaaataagtactataaggaaagttaatatgatcagtgatacttaatttgaaaatatcaatgaaggtacgctaaagtaacttattttctcattca |
100 |
Q |
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| T |
39385312 |
aacatctaataaagtactataatgaaacttaatatgatcagtgatacttaatttggaaatatcaatgaaggtacgctaaagtaacttagtttctcattca |
39385213 |
T |
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| Q |
101 |
a-aaaacctctagaaacctaacaattgatagtgtttttggtgtctatagagccnnnnnnnnnnnnnnnnnnnnatggaatttagacttctttctccgtgc |
199 |
Q |
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| T |
39385212 |
aaaaaacctctagaaacctaacaattgatagtgtttttggtgtctatagagcc---------tttttttttttatggaatttagacttctttctccgtgc |
39385122 |
T |
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| Q |
200 |
caaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagtnnnnnnnctagcaggaattcagacttctttgggtgttggatgaaatat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39385121 |
caaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaaataaaaaaactagcaggaattcagacttctttgggtgttggatggaatat |
39385022 |
T |
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| Q |
300 |
tttctgaaaatcacttcttcccttcacttggatttt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39385021 |
tttctgaaaatcacttcttcccttcacttggatttt |
39384986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 39180566 - 39180635
Alignment:
| Q |
182 |
agacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagt |
251 |
Q |
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| T |
39180566 |
agacttctttctcagtgccaaagtctggaactgagtacctcaaagttgaagaataatcttacaaccaagt |
39180635 |
T |
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