View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_53 (Length: 334)

Name: NF1705_low_53
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_53
NF1705_low_53
[»] chr8 (6 HSPs)
chr8 (56-323)||(42024703-42024969)
chr8 (27-218)||(34923968-34924166)
chr8 (134-218)||(14111673-14111759)
chr8 (56-149)||(29844993-29845086)
chr8 (176-220)||(11355428-11355471)
chr8 (28-68)||(14111642-14111682)
[»] chr2 (5 HSPs)
chr2 (66-222)||(7444399-7444555)
chr2 (93-216)||(22017699-22017824)
chr2 (95-216)||(10354844-10354967)
chr2 (95-216)||(14322986-14323108)
chr2 (111-216)||(28198551-28198658)
[»] scaffold0039 (1 HSPs)
scaffold0039 (56-218)||(57620-57784)
[»] chr4 (11 HSPs)
chr4 (30-218)||(41222909-41223089)
chr4 (56-216)||(48085207-48085368)
chr4 (156-213)||(31229000-31229058)
chr4 (79-213)||(13779932-13780068)
chr4 (30-81)||(13780081-13780132)
chr4 (95-216)||(35292638-35292761)
chr4 (24-129)||(41809125-41809225)
chr4 (176-220)||(26860785-26860828)
chr4 (111-213)||(35033210-35033314)
chr4 (30-82)||(35292789-35292841)
chr4 (184-216)||(41809235-41809267)
[»] chr7 (6 HSPs)
chr7 (30-218)||(19848424-19848604)
chr7 (107-218)||(5350340-5350453)
chr7 (111-216)||(19626100-19626207)
chr7 (25-61)||(12634222-12634258)
chr7 (132-214)||(23416363-23416447)
chr7 (28-76)||(36656768-36656816)
[»] chr1 (10 HSPs)
chr1 (56-222)||(15582244-15582412)
chr1 (78-218)||(32573689-32573831)
chr1 (31-216)||(41404819-41405006)
chr1 (30-216)||(34970799-34970982)
chr1 (156-218)||(35306274-35306337)
chr1 (30-91)||(42366690-42366751)
chr1 (95-216)||(48046985-48047108)
chr1 (185-220)||(50108495-50108530)
chr1 (176-220)||(42116575-42116618)
chr1 (176-220)||(49741973-49742016)
[»] chr3 (8 HSPs)
chr3 (95-216)||(44714007-44714130)
chr3 (27-216)||(42028561-42028757)
chr3 (156-218)||(35231290-35231353)
chr3 (28-91)||(24372955-24373018)
chr3 (58-216)||(32279043-32279203)
chr3 (95-216)||(39439280-39439403)
chr3 (28-81)||(32279200-32279253)
chr3 (176-220)||(30812725-30812768)
[»] chr5 (9 HSPs)
chr5 (69-213)||(7505282-7505428)
chr5 (30-216)||(30085585-30085773)
chr5 (26-216)||(4944427-4944623)
chr5 (69-164)||(21521486-21521582)
chr5 (69-164)||(21532052-21532148)
chr5 (113-216)||(32026515-32026619)
chr5 (58-216)||(41484242-41484402)
chr5 (166-216)||(16596812-16596862)
chr5 (176-220)||(32233667-32233710)
[»] scaffold0022 (2 HSPs)
scaffold0022 (64-216)||(43453-43607)
scaffold0022 (64-216)||(77173-77327)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 56 - 323
Target Start/End: Original strand, 42024703 - 42024969
Alignment:
Q  56 aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt 155  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||         ||||| |||||||||||||||    
T  42024703 aacggaatggaacggaatggagcggaacggaatggagcggaataaagattccattctattgtttggatac---------gaacgaaactaattttttatt 42024793  T
Q  156 cattgtttggaaattgacgaaacggaacgagttataaattttttattccaattttacccttatttttnnnnnnnnnnnncat--------caaattgaat 247  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||             ||        ||||||||||    
T  42024794 cattgtttggaaattgacgaaacggaacaagttataaattttttattccaattttacccttatttttaaaaaaaaaaaatatatatatatcaaattgaat 42024893  T
Q  248 tctctactcaattcaatcatttgtgagtagcacccatacatgcagtttcattagaaattttttcaacattcttcat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42024894 tctctactcaattcaatcatttgtgagtagcacccatacatgcagtttcattagaaattttttcaacattcttcat 42024969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 34923968 - 34924166
Alignment:
Q  27 ctaaggctctgtttggataagttaaaacc-----aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttgg 121  Q
    |||||||||||||||||||||| |||| |     |||||||||||||||||||||  ||||| |||| ||   |||||||||||||| || |||||||||    
T  34923968 ctaaggctctgtttggataagtgaaaatcaacagaacggaatggaacggaatggaatggaacagaattgaatggaataaagatttcattccattgtttgg 34924067  T
Q  122 atactttaggatggaacggaactaattttttatt-cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
    |||||||| ||||||||| ||||| ||||  ||| ||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  34924068 atactttatgatggaacgaaactagttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttattccaattttacccttat 34924166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 14111673 - 14111759
Alignment:
Q  134 ggaacggaactaattttttattc-attgtttggaaattga-cgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
    |||||||||||| ||||  |||| |||||||||||| | | || ||||||||||||||||| |||||||||||||||||||||||||    
T  14111673 ggaacggaactagttttccattccattgtttggaaagttagcggaacggaacgagttataacttttttattccaattttacccttat 14111759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 29845086 - 29844993
Alignment:
Q  56 aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattt 149  Q
    ||||||||||||   |||||| |||||||||||||| | |||||||||| ||| || | |||||||||| || | || |||| |||||||||||    
T  29845086 aacggaatggaatataatggaacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaattt 29844993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 11355471 - 11355428
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||    
T  11355471 aacggaacaagttataaattttt-attccacttttacccttattt 11355428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 14111642 - 14111682
Alignment:
Q  28 taaggctctgtttggataagttaaaaccaacggaatggaac 68  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  14111642 taaggctctgtttggataagtgaaaatcaacggaacggaac 14111682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 7444399 - 7444555
Alignment:
Q  66 aacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattcattgtttgg 165  Q
    ||||||| ||||||||| ||||| |||| |||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  7444399 aacggaacggagcggaatggaatagagcggaataaagatttcattatattgtttggatactttatgatggaacggaacttattttttattcattgtttgg 7444498  T
Q  166 aaattgacgaaacggaacgagttataaattttttattccaattttacccttattttt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7444499 aaattgacgaaacggaacgagttataaattttttattccaattttacccttattttt 7444555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 22017699 - 22017824
Alignment:
Q  93 cagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt-cattgtttgg-aaattgacgaaacggaacgagttat 190  Q
    ||||||||||||| || || |||||| ||||||||||  |||||| | ||||||||||| ||| ||||||| || ||||||||| ||||||| || ||||    
T  22017699 cagaataaagattccattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattat 22017798  T
Q  191 aaattttttattccaattttaccctt 216  Q
    || ||||||||||  |||||||||||    
T  22017799 aatttttttattcatattttaccctt 22017824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 10354967 - 10354844
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaattga-cgaaacggaacgagttataa 192  Q
    ||||||| |||||| || |||||||||||| || | || |||| |||||||||||   | || |||||||||||  ||| || ||||||||  |||||||    
T  10354967 gaataaaaatttcattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaacatgttataa 10354868  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||||||||||||||||    
T  10354867 cttttttattccaattttaccctt 10354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 14322986 - 14323108
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaatt-gacgaaacggaacgagttataa 192  Q
    ||||||||||||||  | ||  ||| ||||||||| ||||||| || |||||||||| |||| |||||||||||||| ||| ||| | ||  ||||||||    
T  14322986 gaataaagatttcatcccatcctttagatactttatgatggaatggtactaatttttcattctattgtttggaaatttgacaaaatgaaataagttataa 14323085  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||| ||||||||||||    
T  14323086 -ttttttattctaattttaccctt 14323108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 28198551 - 28198658
Alignment:
Q  111 ctattgtttggatactttaggatggaacggaactaatttttta-ttcattgtttggaaattgac-gaaacggaacgagttataaattttttattccaatt 208  Q
    |||||||||||||| ||||  | |||| ||||||||||||  | ||||||||||||||| |||  | ||||||| || |||||| |||||||||||| ||    
T  28198551 ctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtgaatggaacggaatgatttataacttttttattccattt 28198650  T
Q  209 ttaccctt 216  Q
    ||||||||    
T  28198651 ttaccctt 28198658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 218
Target Start/End: Complemental strand, 57784 - 57620
Alignment:
Q  56 aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt 155  Q
    |||||||||||||||||||||  |||||||||| ||   |||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||  |||    
T  57784 aacggaatggaacggaatggaatggaacggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccatt 57685  T
Q  156 -cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
     ||||||||||||| || ||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  57684 ccattgtttggaaagttaacggaacggaacgagttataacttttttatttcaattttacccttat 57620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 41222909 - 41223089
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatacttta 129  Q
    ||||||||||||||||||| |||| ||||||||     ||||||||| ||||||||||||||     ||||||||| || || |||||||||||||||||    
T  41222909 aggctctgtttggataagtgaaaatcaacggaa-----cggaatggaacggaacggaatgga-----ataaagattccattccattgtttggatacttta 41222998  T
Q  130 ggatggaacggaactaattttttattc-attgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
     ||||||||||||||| ||||  |||| |||||||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  41222999 tgatggaacggaactagttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttattccaattttacccttat 41223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 48085368 - 48085207
Alignment:
Q  56 aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt 155  Q
    ||||||| | || ||||||||||||| | ||||||| | ||||||| ||| || || |||||||||||| |||| ||||||| | | ||||||||  |||    
T  48085368 aacggaacgaaatggaatggagcggagcagaatggaacggaataaaaattacattccattgtttggata-tttacgatggaatgaagctaattttccatt 48085270  T
Q  156 catt-gtttggaaatt-gacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    | || ||||| ||| | |||| |||||||  | |||||| |||||||||||||||||||||||    
T  48085269 cctttgtttgaaaaatcgacggaacggaattaattataacttttttattccaattttaccctt 48085207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 31229058 - 31229000
Alignment:
Q  156 cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacc 213  Q
    ||||||||||||| |||||| ||||||| |||||||||  |||||||||||||||||||    
T  31229058 cattgtttggaaagttgacggaacggaatgagttataacatttttattccaattttacc 31229000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 13780068 - 13779932
Alignment:
Q  79 ggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaatttttta-ttcattgtttggaaattg-acgaa 176  Q
    |||| ||||| |||| |||||||| || ||  |||||||||||||| ||||  | |||| ||||||||||||  | | ||||||||||||| || | | |    
T  13780068 ggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatgga 13779969  T
Q  177 acggaacgagttataaattttttattccaattttacc 213  Q
    |||||| || |||||| |||||||||||| |||||||    
T  13779968 acggaatgatttataatttttttattccatttttacc 13779932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 13780132 - 13780081
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcgga 81  Q
    |||||||||||||||||  | |||| |||||| |||||||||||||||||||    
T  13780132 aggctctgtttggataacatgaaactaacggagtggaacggaatggagcgga 13780081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 35292761 - 35292638
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaattgacga-aacggaacgagttataa 192  Q
    ||||||| |||||| |  |||||||||||| || | || |||| |||||||||||   | || |||||||||||| |||  | ||||||||  |||||||    
T  35292761 gaataaaaatttcattacattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaacagaacggaacatgttataa 35292662  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||||||||||||||||    
T  35292661 cttttttattccaattttaccctt 35292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 41809125 - 41809225
Alignment:
Q  24 actctaaggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggat 123  Q
    ||||||||||||||||||||||| ||||||| ||||||      |||||| || | ||| |||||||| | ||||||||||| || || | | |||||||    
T  41809125 actctaaggctctgtttggataacttaaaactaacggag-----cggaatagaacagaatggaatggaacggaataaagattccattccactatttggat 41809219  T
Q  124 acttta 129  Q
    ||||||    
T  41809220 acttta 41809225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 26860785 - 26860828
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  26860785 aacggaacaagttataaatttt-tattccacttttacccttattt 26860828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 35033210 - 35033314
Alignment:
Q  111 ctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaattgac-gaaacggaacgagttataaattttttattccaatt 208  Q
    |||||||||||||| ||||  | |||| ||||||||||||  | || |||||||||||| |||  | ||||||| || |||||| |||||||||||| ||    
T  35033210 ctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccattt 35033309  T
Q  209 ttacc 213  Q
    |||||    
T  35033310 ttacc 35033314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 35292841 - 35292789
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaa 82  Q
    |||||||||||||||||  |||||| ||||||  |||||||||||||| ||||    
T  35292841 aggctctgtttggataatctaaaactaacggagcggaacggaatggagtggaa 35292789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 41809235 - 41809267
Alignment:
Q  184 gagttataaattttttattccaattttaccctt 216  Q
    ||||||||||| |||||||||||||||||||||    
T  41809235 gagttataaatattttattccaattttaccctt 41809267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 19848604 - 19848424
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatacttta 129  Q
    ||||||||||||||||||| |||| |||||||| | ||||||| ||| ||||| ||||||||     ||||||||| || || |||||||||||||||||    
T  19848604 aggctctgtttggataagtgaaaatcaacggaacgaaacggaacggaacggaatggaatgga-----ataaagattccattccattgtttggatacttta 19848510  T
Q  130 ggatggaacggaactaattttttatt-cattgtttggaaattgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
     ||||||||||||||| ||||  ||| ||||||||||||| |     ||||||||||||||||| ||||||||| |||||||||||||||    
T  19848509 tgatggaacggaactagttttccattccattgtttggaaagt----taacggaacgagttataacttttttatttcaattttacccttat 19848424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 5350453 - 5350340
Alignment:
Q  107 caatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaa-ttgacgaaacggaacgagttataaattttttattcc 204  Q
    ||||| ||||||||| ||  ||| |||||| ||||||  |||| | |||| |||||||||||| ||||||||| ||||  |||||||| ||||| ||| |    
T  5350453 caatccattgtttgggtatattatgatggatcggaacagatttctcattctattgtttggaaagttgacgaaatggaataagttataactttttaatttc 5350354  T
Q  205 aattttacccttat 218  Q
    ||||||||||||||    
T  5350353 aattttacccttat 5350340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 19626207 - 19626100
Alignment:
Q  111 ctattgtttggatactttaggatggaacggaactaattttttattca-ttgtttggaaattgac-gaaacggaacgagttataaattttttattccaatt 208  Q
    |||||||||||||| ||||  | |||| ||||||||||||  | ||| ||||||||||| |||  | ||||||| || |||||| |||||||||||| ||    
T  19626207 ctattgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccattt 19626108  T
Q  209 ttaccctt 216  Q
    ||||||||    
T  19626107 ttaccctt 19626100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 12634258 - 12634222
Alignment:
Q  25 ctctaaggctctgtttggataagttaaaaccaacgga 61  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  12634258 ctctaaggctctgtttggataacttaaaactaacgga 12634222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 23416363 - 23416447
Alignment:
Q  132 atggaacggaactaattttttattc-attgtttggaaattga-cgaaacggaacgagttataaattttttattccaattttaccc 214  Q
    ||||| |||||| ||||  |||||| |||||||||||| ||| || || |||| | |||||||||||||||||||| ||||||||    
T  23416363 atggagcggaacaaattacttattccattgtttggaaaatgaacggaatggaatgtgttataaattttttattccatttttaccc 23416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 36656768 - 36656816
Alignment:
Q  28 taaggctctgtttggataagttaaaaccaacggaatggaacggaatgga 76  Q
    ||||||||||||||||||| || |||| | ||||||| |||||||||||    
T  36656768 taaggctctgtttggataacttgaaactagcggaatgtaacggaatgga 36656816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 222
Target Start/End: Complemental strand, 15582412 - 15582244
Alignment:
Q  56 aacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt 155  Q
    ||||||| |||| |||| |||  |||| |||||||| | ||||||| ||| || || ||||||||||||||||| ||||||| ||||||||||||  |||    
T  15582412 aacggaacggaatggaacggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccatt 15582313  T
Q  156 -cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttattttt 222  Q
     ||||||||||||| |||||| ||| ||| ||||||||||  ||||||||||||||||||||| |||||    
T  15582312 ccattgtttggaaagttgacggaacagaaagagttataaaaattttattccaattttaccctttttttt 15582244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 32573831 - 32573689
Alignment:
Q  78 cggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaa-ttgacga 175  Q
    ||||||||||||||   ||||||||||| || || ||||||||||||||||| |||||||| |||||| ||||  |||| |||||||| ||| || ||      
T  32573831 cggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagttaacag 32573732  T
Q  176 aacggaacgagttataaattttttattccaattttacccttat 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  32573731 aacggaacgagttataacttttttattccaattttacccttat 32573689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 41405006 - 41404819
Alignment:
Q  31 ggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttag 130  Q
    |||||||||||||||| ||||||| ||||||  |||| |||| ||| ||| | |||||||| | ||||||||||| || || | |||||||||||||||     
T  41405006 ggctctgtttggataacttaaaactaacggagcggaatggaacggaacgggatggaatggaacggaataaagattccattccactgtttggatactttac 41404907  T
Q  131 gatggaacggaactaattttttatt-cattgtttgg-aaattgacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    || ||||   |  ||||||   ||| |||||||||| ||||  ||| ||||||| ||||||||||| |||||||||||||||||||||    
T  41404906 gacggaatctagttaatttcccattccattgtttggaaaatcaacggaacggaatgagttataaatattttattccaattttaccctt 41404819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 34970982 - 34970799
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatacttta 129  Q
    ||||||||||||||||||    ||| ||||||||||||||||||||||||||||| |||     |||||||| || ||| || |||||||||||| ||||    
T  34970982 aggctctgtttggataagcctgaactaacggaatggaacggaatggagcggaacgaaat-----agaataaaaatgtcattccattgtttggatatttta 34970888  T
Q  130 ggatggaacggaactaatttttta-ttcattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
     || |||| |||||||||||   | | ||||||||||||| | |||| ||||| | | ||||||   ||||||||||| ||||||||||    
T  34970887 tgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttataccctttttattccatttttaccctt 34970799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 35306274 - 35306337
Alignment:
Q  156 cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
    ||||||||||||| |||||| || |||| ||||||||| |||||||||||||||||||||||||    
T  35306274 cattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttacccttat 35306337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 42366751 - 42366690
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatgga 91  Q
    ||||||||||||||||| ||||||| ||||||  |||| |||||||| |||| |||||||||    
T  42366751 aggctctgtttggataacttaaaactaacggagcggaaaggaatggaacggagcggaatgga 42366690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 48047108 - 48046985
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaattgac-gaaacggaacgagttataa 192  Q
    ||||||| |||||| || |||||||||| | |||| ||  ||| |||||||||||   | || |||||||||||| |||  | ||||||||  |||||||    
T  48047108 gaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaacggaacatgttataa 48047009  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||||||||||||||||    
T  48047008 cttttttattccaattttaccctt 48046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 50108495 - 50108530
Alignment:
Q  185 agttataaattttttattccaattttacccttattt 220  Q
    |||||||| |||||||||||||||||||||||||||    
T  50108495 agttataacttttttattccaattttacccttattt 50108530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 42116575 - 42116618
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  42116575 aacggaacaagttataaatttt-tattccacttttacccttattt 42116618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 49742016 - 49741973
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||    
T  49742016 aacggaacaagttataaattttt-attccacttttacccttattt 49741973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 44714130 - 44714007
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttgg-aaattgacgaaacggaacgagttataa 192  Q
    |||||||||||||| || |||||||||||| |||| ||||||| ||||||||||||| |||| ||||||||| ||||  ||| ||||||| || ||||||    
T  44714130 gaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaacggaacggaatgaattataa 44714031  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||||||||||||||||    
T  44714030 tttttttattccaattttaccctt 44714007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 42028561 - 42028757
Alignment:
Q  27 ctaaggctctgtttggataagttaaaaccaacggaatggaacggaatggagc-----ggaacggaatggagcagaataaagatttcaatctattgtttgg 121  Q
    ||||||||||||||||||||  |||||| ||||||  ||||| |||||||||     |||| |||||||||  ||| |||||||||| || |||||||||    
T  42028561 ctaaggctctgtttggataacctaaaactaacggagcggaaccgaatggagcggaatggaatggaatggagtggaacaaagatttcattccattgtttgg 42028660  T
Q  122 atactttaggatggaacggaactaatttttta-ttcattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    ||| | || |  |||| |||||||||||   | | ||||||||||||| | |||| || | ||  |||||||| |||||||||||| ||||||||||    
T  42028661 atattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattccatttttaccctt 42028757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 35231290 - 35231353
Alignment:
Q  156 cattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttacccttat 218  Q
    ||||||||||||| |||||| || |||| ||||||||| |||||||||||||||||||||||||    
T  35231290 cattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttacccttat 35231353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 24372955 - 24373018
Alignment:
Q  28 taaggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatgga 91  Q
    |||||| |||||| ||||| ||||||| |||||| ||||| |||||||||||||| ||||||||    
T  24372955 taaggccctgtttcgataacttaaaactaacggagtggaatggaatggagcggaatggaatgga 24373018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 32279203 - 32279043
Alignment:
Q  58 cggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaatttttta-ttc 156  Q
    |||| ||||||||||||||  |||| |||| ||||| ||| |||| || ||  |||||||||||||| ||||  | ||||  |||||||||||  | | |    
T  32279203 cggagtggaacggaatggaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactcc 32279104  T
Q  157 attgtttggaaattg-acgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    |||||||||||| || | | ||||||| || |||||| ||||| |||||| ||||||||||    
T  32279103 attgtttggaaagtgaatggaacggaatgatttataactttttcattccatttttaccctt 32279043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 39439280 - 39439403
Alignment:
Q  95 gaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaaattga-cgaaacggaacgagttataa 192  Q
    ||||||| |||||| || |||||||||||| || | || |||| | |||||||||   | || |||||||| ||| ||| || ||||||||  |||||||    
T  39439280 gaataaaaatttcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttataa 39439379  T
Q  193 attttttattccaattttaccctt 216  Q
     |||||||||||||||||||||||    
T  39439380 cttttttattccaattttaccctt 39439403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 32279253 - 32279200
Alignment:
Q  28 taaggctctgtttggataagttaaaaccaacggaatggaacggaatggagcgga 81  Q
    |||||||||||||||||||  | |||| ||||||  ||||||||||||||||||    
T  32279253 taaggctctgtttggataacatgaaactaacggagcggaacggaatggagcgga 32279200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 30812725 - 30812768
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  30812725 aacggaacaagttataaatttt-tattccacttttacccttattt 30812768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 7505282 - 7505428
Alignment:
Q  69 ggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtttggaa 167  Q
    |||||||| ||||  |||||||| ||||||||| |||  | || ||| ||| ||||||||| ||||||| ||| ||||||||  |||| |||||||| ||    
T  7505282 ggaatggaacggagtggaatggaacagaataaaaattatattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaa 7505381  T
Q  168 a-ttgacgaaacggaacgagttataaattttttattccaattttacc 213  Q
    | |||||| ||||||| ||||||||  ||||||||||||||||||||    
T  7505382 agttgacggaacggaatgagttatatcttttttattccaattttacc 7505428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 30085773 - 30085585
Alignment:
Q  30 aggctctgtttggataagttaaaaccaacggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatacttta 129  Q
    |||||||||||||||||  | |||| ||||||  ||||||||||||||||||  |||| ||||| ||| |||| || ||  |||||||||||||| ||||    
T  30085773 aggctctgtttggataacatgaaactaacggagcggaacggaatggagcggagtggaacggagcggaacaaaggttccatcctattgtttggatatttta 30085674  T
Q  130 ggatggaacggaactaatttttta-ttcattgtttggaaattg-acgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
      | ||||  |||||||||||  | | ||||||||||||| || | | ||||||| || |||||| ||||||||| || ||||||||||    
T  30085673 ctacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataacttttttatttcatttttaccctt 30085585  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 4944623 - 4944427
Alignment:
Q  26 tctaaggctctgtttggataagttaaaaccaacggaatggaacggaatggagcgg-----aacggaatggagcagaataaagatttcaatctattgtttg 120  Q
    |||||||||||||||||||||  |||||| ||||||  |||||||||| ||||||     || |||| ||||  ||| ||||||| || || ||||||||    
T  4944623 tctaaggctctgtttggataacctaaaactaacggagcggaacggaat-gagcggaatgaaatggaacggagtggaacaaagattccattccattgtttg 4944525  T
Q  121 gatactttaggatggaacggaactaatttttta-ttcattgtttggaaa-ttgacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    |||| | || || | || |||||||||||  || | ||||||||||||| | |||| || ||||  || ||||| |||||||||||| ||||||||||    
T  4944524 gatattatacgacgaaatggaactaatttcatactccattgtttggaaagtggacggaatggaattagatataacttttttattccatttttaccctt 4944427  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 21521582 - 21521486
Alignment:
Q  69 ggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt-cattgtttg 164  Q
    ||||||||||||||||||| |||   ||||||| |||||| || |||||||||||| | || ||||||| ||||| ||||  ||||| |||||||||    
T  21521582 ggaatggagcggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttg 21521486  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 21532148 - 21532052
Alignment:
Q  69 ggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt-cattgtttg 164  Q
    ||||||||||||||||||| |||   ||||||| |||||| || |||||||||||| | || ||||||| ||||| ||||  ||||| |||||||||    
T  21532148 ggaatggagcggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttg 21532052  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 32026619 - 32026515
Alignment:
Q  113 attgtttggatactttaggatggaacggaactaattttttattcattgtttggaa-attgacgaaacggaacgagttataaattttttattccaatttta 211  Q
    |||||||||||| |||| |||||| |||||| ||||| |  |||||| ||||||  ||||||| || | || | || |||||||||||||||||| ||||    
T  32026619 attgtttggatattttatgatggagcggaacaaatttatgtttcattatttggattattgacggaatgaaatgggtcataaattttttattccaaattta 32026520  T
Q  212 ccctt 216  Q
    |||||    
T  32026519 ccctt 32026515  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 41484402 - 41484242
Alignment:
Q  58 cggaatggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttatt-c 156  Q
    ||||||||||| ||| | |||||||  ||||||||| ||| ||  ||| || |  |||||||||||| |||| ||||||||||||| |||| || ||| |    
T  41484402 cggaatggaacagaaagaagcggaatagaatggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattcc 41484303  T
Q  157 attgtttggaaattg-acgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    ||||||| |||| || ||| ||||||| || |||||| || ||||||| | ||||| ||||    
T  41484302 attgtttagaaagtgaacggaacggaatgaattataagttatttattctatttttatcctt 41484242  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 16596812 - 16596862
Alignment:
Q  166 aaattgacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    ||||||| | || |||| ||||||||| |||||||||||||||||||||||    
T  16596812 aaattgatgtaatggaatgagttataacttttttattccaattttaccctt 16596862  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 32233710 - 32233667
Alignment:
Q  176 aacggaacgagttataaattttttattccaattttacccttattt 220  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||    
T  32233710 aacggaacaagttataaattttt-attccacttttacccttattt 32233667  T

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Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 43453 - 43607
Alignment:
Q  64 ggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtt 162  Q
    |||| ||||||||||||||||||||||| |  ||  ||  || || || |||||||||||| |||| || |||| | ||||||||| | |||| ||||||    
T  43453 ggaatggaatggagcggaacggaatggaacgaaacgaatgttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtt 43552  T
Q  163 tggaaatt-gacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    |||||| | |||  ||||||| ||||||||| ||||||||| |||||||||||||    
T  43553 tggaaagtagacagaacggaatgagttataacttttttatttcaattttaccctt 43607  T

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Target: scaffold0022; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 77173 - 77327
Alignment:
Q  64 ggaacggaatggagcggaacggaatggagcagaataaagatttcaatctattgtttggatactttaggatggaacggaactaattttttattc-attgtt 162  Q
    |||| ||||||||||||||||||||||| |  ||  ||  || || || |||||||||||| |||| || |||| | ||||||||| | |||| ||||||    
T  77173 ggaatggaatggagcggaacggaatggaacgaaacgaatgttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtt 77272  T
Q  163 tggaaatt-gacgaaacggaacgagttataaattttttattccaattttaccctt 216  Q
    |||||| | |||  ||||||| ||||||||| ||||||||| |||||||||||||    
T  77273 tggaaagtagacagaacggaatgagttataacttttttatttcaattttaccctt 77327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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