View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_54 (Length: 330)

Name: NF1705_low_54
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_54
NF1705_low_54
[»] chr6 (24 HSPs)
chr6 (21-315)||(28296153-28296449)
chr6 (21-315)||(28515624-28515920)
chr6 (11-315)||(28186867-28187182)
chr6 (27-315)||(28244268-28244559)
chr6 (36-173)||(28235808-28235945)
chr6 (100-315)||(28326951-28327169)
chr6 (100-315)||(28504587-28504805)
chr6 (110-236)||(2186369-2186495)
chr6 (110-236)||(29827541-29827667)
chr6 (110-239)||(28141087-28141216)
chr6 (110-236)||(28096953-28097079)
chr6 (110-240)||(28150723-28150853)
chr6 (144-239)||(26144414-26144509)
chr6 (145-235)||(26850277-26850367)
chr6 (16-74)||(28244587-28244645)
chr6 (153-227)||(29476618-29476692)
chr6 (119-221)||(29523459-29523561)
chr6 (144-241)||(27529845-27529942)
chr6 (144-239)||(25512437-25512532)
chr6 (144-237)||(25546531-25546624)
chr6 (144-237)||(26057470-26057563)
chr6 (144-237)||(26077440-26077533)
chr6 (190-235)||(26813102-26813147)
chr6 (164-236)||(27697147-27697219)
[»] scaffold0038 (3 HSPs)
scaffold0038 (27-315)||(44430-44721)
scaffold0038 (36-173)||(35970-36107)
scaffold0038 (16-74)||(44749-44807)
[»] scaffold0019 (1 HSPs)
scaffold0019 (100-315)||(56785-57003)
[»] chr1 (3 HSPs)
chr1 (109-236)||(26137434-26137561)
chr1 (164-238)||(28126242-28126316)
chr1 (164-237)||(266907-266980)
[»] chr5 (1 HSPs)
chr5 (103-245)||(16692404-16692546)
[»] chr4 (3 HSPs)
chr4 (145-235)||(18678101-18678191)
chr4 (145-235)||(18688158-18688248)
chr4 (145-237)||(18730039-18730131)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 28296153 - 28296449
Alignment:
Q  21 aaattcatattcatagtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttcta 120  Q
    ||||| ||||| | || |||||| ||||||||||||||||||||||||||||||       |||||| || |||||||||||||||||||||| ||||||    
T  28296153 aaattgatattaaaagaattagttaaaaagaacaaaatgaagattaaagataacaaaaaa-cccattcatagatatcagtattcaccttattttcttcta 28296251  T
Q  121 agacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaa 220  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  28296252 agacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccattttctctatcaa 28296351  T
Q  221 ggcatgtaatgtc---acataactccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttgatatttcatgcagttaccat 315  Q
    |||||||||||||   |||||| |||    | ||  || || ||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||    
T  28296352 ggcatgtaatgtcacaacataattccccaggtaccagtagatctttatgagagatttgtcatgcaacactctgatttgataattcatgcagttaccat 28296449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 28515920 - 28515624
Alignment:
Q  21 aaattcatattcatagtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttcta 120  Q
    ||||| ||||| | || |||||| ||||||||||||||||||||||||||||||       |||||| || |||||||||||||||||||||| ||||||    
T  28515920 aaattgatattaaaagaattagttaaaaagaacaaaatgaagattaaagataacaaaaaa-cccattcatagatatcagtattcaccttattttcttcta 28515822  T
Q  121 agacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaa 220  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  28515821 agacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccattttctctatcaa 28515722  T
Q  221 ggcatgtaatgtc---acataactccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttgatatttcatgcagttaccat 315  Q
    |||||||||||||   |||||| |||    | ||  || || ||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||    
T  28515721 ggcatgtaatgtcacaacataattccccaggtaccagtagatctttatgagagatttgtcatgcaacactctgatttgataattcatgcagttaccat 28515624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 28187182 - 28186867
Alignment:
Q  11 cataggttacaaattcatattcatagtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtatt---cacc 107  Q
    ||||| ||||||||| ||||| |||| || |||||||||||||||| | ||||||||| |||||       || ||| |||||||||||||||   ||||    
T  28187182 catagattacaaattgatattaataggataagtaaaaaagaacaaagtaaagattaaatataacaaaaagacc-attcatggatatcagtattattcacc 28187084  T
Q  108 ttatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttaccca 207  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||  |||||||||||||||||||    
T  28187083 ttatttgcttctaagacatcaattatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttaccca 28186984  T
Q  208 ttttctctatcaaggcatgtaatgtcaca-------ta--actccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttgata 298  Q
    |||||||||||||||||||||| ||||||       ||  |||||||  |||| | ||||  |||| ||||||||| ||  | || ||||||||||||||    
T  28186983 ttttctctatcaaggcatgtaacgtcacaacatcagtaagactccattggcactgcttgatatttaggagagatttatcgagcaacactctgatttgata 28186884  T
Q  299 tttcatgcagttaccat 315  Q
    |||||||||||||||||    
T  28186883 tttcatgcagttaccat 28186867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 27 - 315
Target Start/End: Complemental strand, 28244559 - 28244268
Alignment:
Q  27 atattcatagtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttctaagacat 126  Q
    ||||| |||| ||| |||||||||||||||| |||| |||||||||||        ||||| |||||||||||||||||||| |||| ||||||||||||    
T  28244559 atattaataggattggtaaaaaagaacaaaaggaaggttaaagataacaaaaaaaaccattcatggatatcagtattcacctgattttcttctaagacat 28244460  T
Q  127 gaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatg 226  Q
     |||||| |||| ||||||||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||  |||    
T  28244459 caattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccattttctctatcaagaaatg 28244360  T
Q  227 taatgtc---acataactccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttgatatttcatgcagttaccat 315  Q
    ||| |||   |||||| |||    | ||  ||||| ||||||||||||||||||||  || || ||||||||||||||||||||||||||||    
T  28244359 taacgtcacaacataattcccctcgtacctgttgatctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccat 28244268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 28235945 - 28235808
Alignment:
Q  36 gtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttctaagacatgaattatgt 135  Q
    |||||||||||||||||||||||||||||||||||||||        ||||| ||||| || | ||||||||||||||||||||||||||| |||||| |    
T  28235945 gtattagtaaaaaagaacaaaatgaagattaaagataacaaaaaaaaccattcatggaaattactattcaccttatttgcttctaagacatcaattatat 28235846  T
Q  136 cttcatggaaccacagcctactacgtcttccaggctct 173  Q
    ||| |  |||||||| ||||||||||||||| ||||||    
T  28235845 ctttacagaaccacaacctactacgtcttcctggctct 28235808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 315
Target Start/End: Complemental strand, 28327169 - 28326951
Alignment:
Q  100 tattcaccttatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttc 199  Q
    ||||||||||| || ||||||||||||||||||| |||| ||| ||||||| |||||||| | ||||||| |||||| | |||| ||  || ||||||||    
T  28327169 tattcaccttactttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttc 28327070  T
Q  200 tttacccattttctctatcaaggcatgtaatgtcacataac---tccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttga 296  Q
    |||||| |||| ||| || |||||||||||||| | |||||   ||    || || |||||| ||| ||||||||||||||| | || || |||||||||    
T  28327069 tttacctatttgctccattaaggcatgtaatgtaagataactagtctcccagaactggttgatcttgatgagagatttttcaagcaacacactgatttga 28326970  T
Q  297 tatttcatgcagttaccat 315  Q
    || |||||| |||||||||    
T  28326969 tacttcatggagttaccat 28326951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 315
Target Start/End: Complemental strand, 28504805 - 28504587
Alignment:
Q  100 tattcaccttatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttc 199  Q
    ||||||||||| || ||||||||||||||||||| |||| ||| ||||||| |||||||| | ||||||| |||||| | |||| ||  || ||||||||    
T  28504805 tattcaccttactttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttc 28504706  T
Q  200 tttacccattttctctatcaaggcatgtaatgtcacataac---tccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttga 296  Q
    |||||| |||| ||| || |||||||||||||| | |||||   ||    || || |||||| ||| ||||||||||||||| | || || |||||||||    
T  28504705 tttacctatttgctccattaaggcatgtaatgtaagataactagtctcccagaactggttgatcttgatgagagatttttcaagcaacacactgatttga 28504606  T
Q  297 tatttcatgcagttaccat 315  Q
    || |||||| |||||||||    
T  28504605 tacttcatggagttaccat 28504587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 2186495 - 2186369
Alignment:
Q  110 atttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccatt 209  Q
    |||||| | ||| ||| ||| ||| ||||||||| |||||| |||||||||| |||||||||||||||| |||| ||  || || |||||||||||||||    
T  2186495 atttgcatgtaaaacaggaactatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatt 2186396  T
Q  210 ttctctatcaaggcatgtaatgtcaca 236  Q
    | |||||||||| ||||||||||||||    
T  2186395 tcctctatcaagtcatgtaatgtcaca 2186369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 29827667 - 29827541
Alignment:
Q  110 atttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccatt 209  Q
    |||| |||||||||| |||| ||| ||||||| |||||||| |||||||||  ||||||||||||| || |||| ||  || |||||||||||||||||     
T  29827667 attttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttacccatg 29827568  T
Q  210 ttctctatcaaggcatgtaatgtcaca 236  Q
    |  ||||||||| ||||||||||||||    
T  29827567 tcttctatcaagtcatgtaatgtcaca 29827541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 28141216 - 28141087
Alignment:
Q  110 atttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccatt 209  Q
    |||| ||||||| || || | |||||||| ||||||||| |  ||||| ||| | |||||||||||||| |||| ||  || |||||||||||||||||     
T  28141216 attttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatc 28141117  T
Q  210 ttctctatcaaggcatgtaatgtcacataa 239  Q
    | |||||||||| |||||||||||||||||    
T  28141116 tcctctatcaagtcatgtaatgtcacataa 28141087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 28096953 - 28097079
Alignment:
Q  110 atttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccatt 209  Q
    |||| ||||||| || |||| ||| |||||||||||| ||| ||| |||||| ||||||| |||||||| |||| ||  |  |||||||||||||||||     
T  28096953 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 28097052  T
Q  210 ttctctatcaaggcatgtaatgtcaca 236  Q
    |  ||||||||| ||||||||||||||    
T  28097053 tcttctatcaagtcatgtaatgtcaca 28097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 28150853 - 28150723
Alignment:
Q  110 atttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccatt 209  Q
    |||| ||||||| || |||| ||| ||||||| |||||||| |||  | ||  | |||||||||||||| |||| ||  || |||||||||||||||||     
T  28150853 atttccttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcgtacaatttctttacccatg 28150754  T
Q  210 ttctctatcaaggcatgtaatgtcacataac 240  Q
    |  ||||||||| |||||||||| |||||||    
T  28150753 tcttctatcaagtcatgtaatgttacataac 28150723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 26144509 - 26144414
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacataa 239  Q
    ||||||| |||||| |||  ||||||||  || ||||||| ||  ||||| |||||||||||||| | |||||||||| ||||||| |||||||||    
T  26144509 aaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaaggtcacataa 26144414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 26850367 - 26850277
Alignment:
Q  145 accacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcac 235  Q
    |||||| |||||| || ||||||||||||||    |||| ||  ||||| |||||||||||||| | |||||||||| |||||||||||||    
T  26850367 accacaacctactgcgccttccaggctctttaattgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgtcac 26850277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 28244645 - 28244587
Alignment:
Q  16 gttacaaattcatattcatagtattagtaaaaaagaacaaaatgaagattaaagataac 74  Q
    |||||||||| ||||| |||| ||| |||||||||||||||| |||| |||||||||||    
T  28244645 gttacaaattgatattaataggattggtaaaaaagaacaaaaggaaggttaaagataac 28244587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 29476618 - 29476692
Alignment:
Q  153 ctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgt 227  Q
    ||||||||||| ||||| |||| ||| ||||  ||||| |||||||||||||||||  |||||||||||| ||||    
T  29476618 ctactacgtctcccaggatcttctggtgattcctcacgaacaatttctttacccatgctctctatcaagggatgt 29476692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 29523561 - 29523459
Alignment:
Q  119 taagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatc 218  Q
    ||||||||||||||| |||||| | ||||| || ||||||| | | ||||||||| |||| |||| |  ||| |||| ||||||| |||||||||| |||    
T  29523561 taagacatgaattatatcttcaggcaaccatagtctactacatttcccaggctctgttggtgattctcgacgaacaagttctttagccattttctcgatc 29523462  T
Q  219 aag 221  Q
    |||    
T  29523461 aag 29523459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 27529845 - 27529942
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacataact 241  Q
    ||||||| |||||| |||  ||||||||| |  || |||| ||  ||||| | |||||||||||| | |||||||||| |||||||||||||||||||    
T  27529845 aaccacaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcacataact 27529942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 25512532 - 25512437
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacataa 239  Q
    ||||||| |||||| |||  ||||||||  || ||||||| ||  |||||  ||||||||||||| | |||||||||| ||||||| |||||||||    
T  25512532 aaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacggtttctttacccatgtcctctatcaagtcatgtaaggtcacataa 25512437  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 25546624 - 25546531
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacat 237  Q
    ||||||| |||||| |||  ||||||||  || ||||||| ||  ||||| | |||||||||||| | |||||||||| ||||||| |||||||    
T  25546624 aaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 25546531  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 26057563 - 26057470
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacat 237  Q
    ||||||| |||||| |||  ||||||||  || ||||||| ||  ||||| | |||||||||||| | |||||||||| ||||||| |||||||    
T  26057563 aaccacaacctactgcgttctccaggcttattgggagattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 26057470  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 26077533 - 26077440
Alignment:
Q  144 aaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacat 237  Q
    ||||||| |||||| |||  ||||||||  || ||||||| ||  ||||| | |||||||||||| | |||||||||| ||||||| |||||||    
T  26077533 aaccacaacctactgcgttctccaggcttcttgggagattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcacat 26077440  T

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Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 26813147 - 26813102
Alignment:
Q  190 ggacaatttctttacccattttctctatcaaggcatgtaatgtcac 235  Q
    ||||||||||||||||| | | |||||||||| |||||||||||||    
T  26813147 ggacaatttctttacccgtgtgctctatcaagtcatgtaatgtcac 26813102  T

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Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 27697147 - 27697219
Alignment:
Q  164 tccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcaca 236  Q
    |||||||||||| |  |||| ||  ||||| | |||||||||||| | |||||||||| ||||||||||||||    
T  27697147 tccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcaca 27697219  T

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Target: scaffold0038 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 27 - 315
Target Start/End: Complemental strand, 44721 - 44430
Alignment:
Q  27 atattcatagtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttctaagacat 126  Q
    ||||| |||| ||| |||||||||||||||| |||| |||||||||||        ||||| |||||||||||||||||||| |||| ||||||||||||    
T  44721 atattaataggattggtaaaaaagaacaaaaggaaggttaaagataacaaaaaaaaccattcatggatatcagtattcacctgattttcttctaagacat 44622  T
Q  127 gaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatg 226  Q
     |||||| |||| ||||||||||| ||| ||| ||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||  |||    
T  44621 caattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccattttctctatcaagaaatg 44522  T
Q  227 taatgtc---acataactccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttgatatttcatgcagttaccat 315  Q
    ||| |||   |||||| |||    | ||  ||||| ||||||||||||||||||||  || || ||||||||||||||||||||||||||||    
T  44521 taacgtcacaacataattcccctcgtacctgttgatctttatgagagatttttcatccaacacactgatttgatatttcatgcagttaccat 44430  T

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Target: scaffold0038; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 36107 - 35970
Alignment:
Q  36 gtattagtaaaaaagaacaaaatgaagattaaagataacnnnnnnncccattaatggatatcagtattcaccttatttgcttctaagacatgaattatgt 135  Q
    |||||||||||||||||||||||||||||||||||||||        ||||| ||||| || | ||||||||||||||||||||||||||| |||||| |    
T  36107 gtattagtaaaaaagaacaaaatgaagattaaagataacaaaaaaaaccattcatggaaattactattcaccttatttgcttctaagacatcaattatat 36008  T
Q  136 cttcatggaaccacagcctactacgtcttccaggctct 173  Q
    ||| |  |||||||| ||||||||||||||| ||||||    
T  36007 ctttacagaaccacaacctactacgtcttcctggctct 35970  T

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Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 44807 - 44749
Alignment:
Q  16 gttacaaattcatattcatagtattagtaaaaaagaacaaaatgaagattaaagataac 74  Q
    |||||||||| ||||| |||| ||| |||||||||||||||| |||| |||||||||||    
T  44807 gttacaaattgatattaataggattggtaaaaaagaacaaaaggaaggttaaagataac 44749  T

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Target: scaffold0019 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 315
Target Start/End: Original strand, 56785 - 57003
Alignment:
Q  100 tattcaccttatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttc 199  Q
    |||||||||||||| |||||||||||| |||||| |||| ||||||||| | |||||||||||||||||||||||||||||| | ||  |||||||||||    
T  56785 tattcaccttattttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttc 56884  T
Q  200 tttacccattttctctatcaaggcatgtaatgtc---acataactccatgagcacgggttgaactttatgagagatttttcatgtaatactctgatttga 296  Q
    |||||||||||||||||||||||||||||| |||   |||||| |||    | ||   |||| ||||||||||||||||||||| || ||||| ||||||    
T  56885 tttacccattttctctatcaaggcatgtaacgtcacaacataattcccctggtaccatttgatctttatgagagatttttcatgcaacactctaatttga 56984  T
Q  297 tatttcatgcagttaccat 315  Q
    | |||||||||| ||||||    
T  56985 tgtttcatgcagctaccat 57003  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 26137561 - 26137434
Alignment:
Q  109 tatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccat 208  Q
    ||||| ||| ||| ||||||| ||| |||||||| ||||||| |||||| ||| ||||||| ||||| || |||| ||  ||||||||||||||||||||    
T  26137561 tattttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccat 26137462  T
Q  209 tttctctatcaaggcatgtaatgtcaca 236  Q
     | |||||||||| ||||||||| ||||    
T  26137461 atcctctatcaagtcatgtaatgccaca 26137434  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 28126242 - 28126316
Alignment:
Q  164 tccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacata 238  Q
    ||||||||||||  | |||| ||  ||||| |||||||||||| | | |||||||||| ||||||||||||||||    
T  28126242 tccaggctctttacgtgattctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgtcacata 28126316  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 266907 - 266980
Alignment:
Q  164 tccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacat 237  Q
    |||||||||||| || |||| ||  ||||| | |||||||||||| | |||||||| | |||||||||||||||    
T  266907 tccaggctctttaggtgattcttggcggaccacttctttacccatgtcctctatcatgtcatgtaatgtcacat 266980  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 16692546 - 16692404
Alignment:
Q  103 tcaccttatttgcttctaagacatgaattatgtcttcatggaaccacagcctactacgtcttccaggctcttttggagatttttcacggacaatttcttt 202  Q
    ||||| ||||| ||||||| || |||| ||| ||||| || ||||||| |||||| ||| | ||||| | |||||| |||| ||  ||||||||||||||    
T  16692546 tcaccatattttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaatttcttt 16692447  T
Q  203 acccattttctctatcaaggcatgtaatgtcacataactccat 245  Q
    |||||| | ||| ||||||  ||| ||||||||||||| ||||    
T  16692446 acccatgtcctcaatcaagtgatgcaatgtcacataaccccat 16692404  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 18678101 - 18678191
Alignment:
Q  145 accacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcac 235  Q
    |||||| |||||||||  || |||||||||| || |||| ||  ||||| ||||||||||||||   ||||| |||| |||||||||||||    
T  18678101 accacaacctactacgcttttcaggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18678191  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 18688158 - 18688248
Alignment:
Q  145 accacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcac 235  Q
    |||||| || ||||||  || |||||||||| || |||| ||  ||||||||||||||||||||   ||||| |||| |||||||||||||    
T  18688158 accacaaccgactacgcttttcaggctctttaggtgattctttccggacaatttctttacccatgacctctagcaagtcatgtaatgtcac 18688248  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 18730039 - 18730131
Alignment:
Q  145 accacagcctactacgtcttccaggctcttttggagatttttcacggacaatttctttacccattttctctatcaaggcatgtaatgtcacat 237  Q
    |||||| || ||||||  || |||||||||| || |||| ||  ||||| ||||||||||||||   ||||| |||| |||||||||||||||    
T  18730039 accacaaccgactacgcttttcaggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcacat 18730131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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