View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_55 (Length: 328)
Name: NF1705_low_55
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 53562258 - 53562552
Alignment:
| Q |
20 |
atttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggaggt |
119 |
Q |
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| T |
53562258 |
atttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttgca----gtcaaggttttgtcttggaggt |
53562353 |
T |
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| Q |
120 |
ggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagag |
219 |
Q |
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| T |
53562354 |
ggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtgaggttgttttgtttgggagag |
53562453 |
T |
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| Q |
220 |
ctgctgctgcgtggtgtctggctgtgttcattgaggttgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
318 |
Q |
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| T |
53562454 |
ctgctgctgcgtggtgtctggctgtgttcattgaggctgtgcagttctgttgtggtgctgctggtttttctgtttgcagcagctcttatgctttctgtg |
53562552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 34821403 - 34821223
Alignment:
| Q |
20 |
atttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggaggt |
119 |
Q |
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|||||||| ||||||||||||||||| || | ||||| || ||||||||| | || |||||| ||||||||||| | |||||||||| ||||||| |
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| T |
34821403 |
atttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttagattttgaggcactgttggaatcaataaaggttttgtggtggaggt |
34821304 |
T |
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| Q |
120 |
ggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaagga-ctgtttgatgcggtga |
199 |
Q |
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| T |
34821303 |
ggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaatccaaaggatttgtttgatgcggtga |
34821223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 4903812 - 4903993
Alignment:
| Q |
18 |
caatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggag |
117 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| |||||||||||||| ||||| ||||||||||| |
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| T |
4903812 |
caatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggag |
4903911 |
T |
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| Q |
118 |
gtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
199 |
Q |
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| T |
4903912 |
atggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtga |
4903993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 22153745 - 22153564
Alignment:
| Q |
18 |
caatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggag |
117 |
Q |
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||||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |||||||||||| | ||||| ||||||||||| |
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| T |
22153745 |
caatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggag |
22153646 |
T |
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| Q |
118 |
gtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
199 |
Q |
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||| |||||| || || || | || |||| |||||| || ||||||| |||||||| |||| |||||| |||||||| |
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| T |
22153645 |
gtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtga |
22153564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 22209660 - 22209479
Alignment:
| Q |
18 |
caatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttggaatctgtcaaggttttgtcttggag |
117 |
Q |
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||||||||||||| |||||||||||||| |||| ||||||||| ||| ||| | || || ||| | |||||||||||| | ||||| ||||||||||| |
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| T |
22209660 |
caatttggagtatttggaaagcgaggaatgacataattttcaacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggag |
22209561 |
T |
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| Q |
118 |
gtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggacgtggaatcccaaggactgtttgatgcggtga |
199 |
Q |
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| T |
22209560 |
gtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtga |
22209479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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