View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_57 (Length: 324)
Name: NF1705_low_57
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 305
Target Start/End: Complemental strand, 108959 - 108667
Alignment:
| Q |
13 |
catcatgccattcaagttacccagtcgcaaaacatctgtgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaa |
112 |
Q |
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| T |
108959 |
catcatgccattcaagttacccagtagcaaaacatctctgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaa |
108860 |
T |
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| Q |
113 |
taaaagttatactgaagttaacctctaaattgttgaaatttttctgcatttttcacttaattacctttttctgtatgtattaaataaacaaccctgaatc |
212 |
Q |
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| T |
108859 |
taaaagttatactgaagttaacctctaaattgttgaaatttttctgcatttttctcttaattacctttttctgtatgtattaaataaacaaccctgaatc |
108760 |
T |
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| Q |
213 |
aaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
305 |
Q |
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| T |
108759 |
aaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
108667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 274
Target Start/End: Complemental strand, 2708414 - 2708331
Alignment:
| Q |
191 |
attaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaa |
274 |
Q |
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| T |
2708414 |
attaaataaacaaccttgaatcggatatcaatgaggactgaatcttttcatatgtagcactgaattgagtttcaaacaggtaaa |
2708331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 89457 - 89372
Alignment:
| Q |
218 |
ttagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagat |
304 |
Q |
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| T |
89457 |
ttagcgatgactgaatcctttcatttt-agcattgaattgagtttcaaacaagtaaataaagctttaatgaatgtggcacatcagat |
89372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 90056 - 89964
Alignment:
| Q |
39 |
gcaaaacatctgtgaaaccatgttttgcatattggg-tccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagt |
130 |
Q |
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| T |
90056 |
gcaaaacctcagtgaaaccatgtgttacgtactggggtccagaggctgaatatgtgttaaaaggtacagaaataataaaagttatactgaagt |
89964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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