View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_58 (Length: 323)

Name: NF1705_low_58
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_58
NF1705_low_58
[»] chr4 (7 HSPs)
chr4 (46-308)||(38324920-38325181)
chr4 (39-92)||(31846872-31846925)
chr4 (64-116)||(30023484-30023535)
chr4 (39-78)||(6607476-6607515)
chr4 (73-103)||(33380616-33380646)
chr4 (29-102)||(41306679-41306752)
chr4 (29-93)||(34025457-34025521)
[»] chr5 (11 HSPs)
chr5 (21-103)||(9177906-9177990)
chr5 (54-105)||(5215666-5215717)
chr5 (21-84)||(36568736-36568801)
chr5 (40-92)||(29385367-29385419)
chr5 (39-105)||(23219363-23219429)
chr5 (39-84)||(1840003-1840048)
chr5 (63-104)||(12605660-12605701)
chr5 (39-92)||(19417469-19417522)
chr5 (72-105)||(41287996-41288029)
chr5 (41-105)||(896280-896344)
chr5 (59-103)||(25879406-25879450)
[»] chr7 (8 HSPs)
chr7 (39-105)||(7211871-7211937)
chr7 (39-105)||(17272710-17272776)
chr7 (39-104)||(25099330-25099395)
chr7 (39-102)||(7211979-7212042)
chr7 (54-105)||(29681776-29681827)
chr7 (39-105)||(4911700-4911766)
chr7 (32-84)||(35418205-35418257)
chr7 (21-89)||(43500011-43500079)
[»] chr3 (6 HSPs)
chr3 (39-105)||(11512398-11512464)
chr3 (39-103)||(31342020-31342084)
chr3 (50-98)||(36738279-36738327)
chr3 (21-105)||(22893961-22894046)
chr3 (52-92)||(17546997-17547037)
chr3 (65-105)||(36738368-36738408)
[»] chr6 (6 HSPs)
chr6 (29-105)||(2543814-2543890)
chr6 (50-106)||(2980787-2980843)
chr6 (29-105)||(11448068-11448144)
chr6 (63-105)||(16193834-16193876)
chr6 (39-104)||(369500-369565)
chr6 (36-104)||(35049750-35049819)
[»] chr1 (8 HSPs)
chr1 (41-105)||(50754735-50754799)
chr1 (41-105)||(28045330-28045393)
chr1 (41-105)||(28739396-28739460)
chr1 (39-92)||(9379842-9379895)
chr1 (39-92)||(9884865-9884918)
chr1 (39-92)||(6539640-6539693)
chr1 (39-84)||(15928155-15928200)
chr1 (63-103)||(23332969-23333009)
[»] chr2 (4 HSPs)
chr2 (41-105)||(7755347-7755411)
chr2 (39-92)||(39819087-39819140)
chr2 (36-92)||(12918557-12918613)
chr2 (45-105)||(15562215-15562275)
[»] chr8 (3 HSPs)
chr8 (39-90)||(43465112-43465163)
chr8 (67-105)||(33763469-33763507)
chr8 (36-89)||(33763536-33763589)
[»] scaffold1315 (1 HSPs)
scaffold1315 (63-105)||(1824-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (63-105)||(205-247)
[»] scaffold0110 (1 HSPs)
scaffold0110 (63-104)||(26512-26553)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 46 - 308
Target Start/End: Original strand, 38324920 - 38325181
Alignment:
Q  46 aaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcaccttaagtgctacatgcactctaagttgctttgagatttaga 145  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||    
T  38324920 aaaggaagaaagccacatgtgatattatggttggccaatatcaccaaccacaatgtcaggt-aagtgctacatgcactctaggttgctttgagatttaga 38325018  T
Q  146 aagagacaaacatggcattggatccggcgttatgggagaatgcagcgtgcttgcacattgcaacttgcaagtcaagtaagtcaaacaaacaaacacatat 245  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38325019 aagagacaaacatggcattgcatccggcgttatgggagaatgcagcgtgcttgcacattgcaacttgcaagtcaagtaagtcaaacaaacaaacacatat 38325118  T
Q  246 aaatgatcaaccactctagttagtcaacgagatcaacggtggggaaccttcacctgaccacaa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38325119 aaatgatcaaccactctagttagtcaacgagatcaacggtggggaaccttcacctgaccacaa 38325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 31846872 - 31846925
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||    
T  31846872 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaa 31846925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 30023535 - 30023484
Alignment:
Q  64 gtgatattatggttgaccaatatcaccaaccacaatgtcaccttaagtgctac 116  Q
    |||| |||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  30023535 gtgacattatggttgaccaatgtcaccaaccacaatatcacc-taagtgctac 30023484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 6607476 - 6607515
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttg 78  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  6607476 tgaaagaaaaagaagaaagccacatgtgacattatggttg 6607515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 103
Target Start/End: Complemental strand, 33380646 - 33380616
Alignment:
Q  73 tggttgaccaatatcaccaaccacaatgtca 103  Q
    |||||||||||||||||||||||||||||||    
T  33380646 tggttgaccaatatcaccaaccacaatgtca 33380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 41306679 - 41306752
Alignment:
Q  29 aaaaaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtc 102  Q
    ||||| ||| |||||||||  |||||||  ||  ||||| ||||||||||  ||||||||||||||||||||||    
T  41306679 aaaaactttttgaaagaaagagaagaaatacatttgtgacattatggttggtcaatatcaccaaccacaatgtc 41306752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 34025521 - 34025457
Alignment:
Q  29 aaaaaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaac 93  Q
    ||||||||| ||||||| || ||| |||||||  | ||||||||||||||| |||| ||||||||    
T  34025521 aaaaaatttgtgaaagagaaagaaaaaagccatttatgatattatggttgatcaatgtcaccaac 34025457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 9177906 - 9177990
Alignment:
Q  21 aaaacaataaaaaatt--tatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtca 103  Q
    |||||||||||||| |  | |||||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  9177906 aaaacaataaaaaaatattgtgaaagaaaaagaagaaagtcacatgtgatattgtggttggccaatatcaccaaccacaatgtca 9177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 5215666 - 5215717
Alignment:
Q  54 aaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  5215666 aaagccacatgtgatattgtggttgaccaatgtcatcaaccacaatgtcacc 5215717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 36568801 - 36568736
Alignment:
Q  21 aaaacaataaaaaat-ttatgaaagaaaaggaagaaagccacatgtgata-ttatggttgaccaat 84  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||| | || ||||||||||||    
T  36568801 aaaacaacaaaaaatattgtgaaagaaaaggaagaaagccacatgtgacatttgtggttgaccaat 36568736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 29385367 - 29385419
Alignment:
Q  40 gaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    ||||||||| |||||||||||||||||| ||| |||||| ||||| |||||||    
T  29385367 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 29385419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 23219363 - 23219429
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||||| |||||||| || || ||| ||| |||||| ||||  ||||||||||||||||||||    
T  23219363 tgaaagaaaaagaagaaagtcatatatgacattgtggttggccaaggtcaccaaccacaatgtcacc 23219429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 1840048 - 1840003
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaat 84  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||    
T  1840048 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaat 1840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 12605660 - 12605701
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtcac 104  Q
    ||||| ||| |||||||||||| |||||||||||||||||||    
T  12605660 tgtgacattgtggttgaccaatgtcaccaaccacaatgtcac 12605701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 19417522 - 19417469
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    ||||||||||| ||||||| ||||||||| ||| | |||||||||| |||||||    
T  19417522 tgaaagaaaagaaagaaagtcacatgtgacattgtagttgaccaatgtcaccaa 19417469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 41287996 - 41288029
Alignment:
Q  72 atggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||| ||||||||||||||||||||||||||    
T  41287996 atggttggccaatatcaccaaccacaatgtcacc 41288029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 896344 - 896280
Alignment:
Q  41 aaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||| || ||||||| || | ||||| ||| ||||||| ||||||||||||||||||| |||||    
T  896344 aaagagaaagaagaaaaccgcctgtgacattgtggttgatcaatatcaccaaccacaatctcacc 896280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 25879406 - 25879450
Alignment:
Q  59 cacatgtgatattatggttgaccaatatcaccaaccacaatgtca 103  Q
    ||||||||| ||| |||||| | ||||||||||||||||||||||    
T  25879406 cacatgtgacattgtggttggctaatatcaccaaccacaatgtca 25879450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 7211937 - 7211871
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||||| |||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  7211937 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 7211871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 17272776 - 17272710
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||||| |||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17272776 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 17272710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 25099330 - 25099395
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcac 104  Q
    |||||||||| |||||||| ||| ||||| ||| |||||||||||  |||||||||||||| ||||    
T  25099330 tgaaagaaaaagaagaaagacacttgtgacattgtggttgaccaaagtcaccaaccacaatttcac 25099395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 7211979 - 7212042
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtc 102  Q
    |||||||||| |||||||| ||||||||| ||| |||||| ||||| || || |||||||||||    
T  7211979 tgaaagaaaaagaagaaagtcacatgtgacattgtggttggccaatgtctcccaccacaatgtc 7212042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 29681827 - 29681776
Alignment:
Q  54 aaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||||||||||  || |||||| ||||| ||||||||||||||||||||    
T  29681827 aaagccacatgtgacgttgtggttggccaatgtcaccaaccacaatgtcacc 29681776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 4911700 - 4911766
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||| || |||||||  ||| ||||| ||||| |||||||||||||||| | ||||||||||||    
T  4911700 tgaaagagaaagaagaaattcacctgtgacattatagttgaccaatatcaccgatcacaatgtcacc 4911766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 35418257 - 35418205
Alignment:
Q  32 aaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaat 84  Q
    |||||| | |||||||| | |||||| ||||||||||||| ||||||||||||    
T  35418257 aaatttgtaaaagaaaaaggagaaagtcacatgtgatattgtggttgaccaat 35418205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 43500079 - 43500011
Alignment:
Q  21 aaaacaataaaaaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcac 89  Q
    ||||||| |||||| || |||||||||| |||||| | || |||||| ||| || ||||||||||||||    
T  43500079 aaaacaacaaaaaaattgtgaaagaaaaagaagaatgtcatatgtgacattgtgattgaccaatatcac 43500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 11512464 - 11512398
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||||| |||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  11512464 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 11512398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 31342084 - 31342020
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtca 103  Q
    |||||||||| ||||||||| |||||||| ||| |||||| ||||| ||||||||||||||||||    
T  31342084 tgaaagaaaaagaagaaagctacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 31342020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 36738327 - 36738279
Alignment:
Q  50 gaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaa 98  Q
    |||||||| ||| ||||||||| ||||||||||||||||||||||||||    
T  36738327 gaagaaagacacttgtgatattgtggttgaccaatatcaccaaccacaa 36738279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 22893961 - 22894046
Alignment:
Q  21 aaaacaataaaaaat-ttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||| ||||||| || | |||||||| |||||||| ||| ||||| ||| ||||||  |||| ||||||||||||||||||||    
T  22893961 aaaacaacaaaaaatcttgttaaagaaaaagaagaaagtcacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacc 22894046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 17547037 - 17546997
Alignment:
Q  52 agaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| ||||| |||||||||| |||||||||||||    
T  17547037 agaaagccacttgtgacattatggttggccaatatcaccaa 17546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 36738368 - 36738408
Alignment:
Q  65 tgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||| | |||||||||| ||||||||||||||||||||    
T  36738368 tgatattgtagttgaccaatgtcaccaaccacaatgtcacc 36738408  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 2543814 - 2543890
Alignment:
Q  29 aaaaaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||||| ||||||||||  || |||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  2543814 aaaaaatttgtgaaagaaaaaaaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 2543890  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 2980787 - 2980843
Alignment:
Q  50 gaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacct 106  Q
    |||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  2980787 gaagaaagccacttgtgacattatggttgaccaatttcaccaaccacaatgtcacct 2980843  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 11448144 - 11448068
Alignment:
Q  29 aaaaaatttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||||| |||||||||| ||| ||||| |||| | | ||| |||||| ||||||| ||||||||||||||||||    
T  11448144 aaaaaatttgtgaaagaaaaagaaaaaagctacatataacattgtggttggccaatattaccaaccacaatgtcacc 11448068  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 16193834 - 16193876
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||    
T  16193834 tgtgacattgtggttgaccaatgtcaccaaccacaatgtcacc 16193876  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 369500 - 369565
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcac 104  Q
    ||||||| || |||||||| ||| ||||| ||| ||||||  |||| |||||||||||||||||||    
T  369500 tgaaagagaaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcac 369565  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 35049819 - 35049750
Alignment:
Q  36 ttatgaaagaaaaggaag-aaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcac 104  Q
    ||||||||||||| |||| |||||||| ||| ||||| ||||||  ||| |||||||||| |||||||||    
T  35049819 ttatgaaagaaaaagaagaaaagccacttgtaatattgtggttggtcaacatcaccaaccgcaatgtcac 35049750  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 50754799 - 50754735
Alignment:
Q  41 aaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||| |||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  50754799 aaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 50754735  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 28045393 - 28045330
Alignment:
Q  41 aaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||| |||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||||    
T  28045393 aaagaaaaagaagaaagccacttgtgacattatggttggccaat-tcaccaaccacaatgtcacc 28045330  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 28739396 - 28739460
Alignment:
Q  41 aaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||| ||| |||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  28739396 aaagaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 28739460  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 9379895 - 9379842
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||||||||||    
T  9379895 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaa 9379842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 9884918 - 9884865
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| |||||||||||||||||| ||| |||||||||||| |||||||    
T  9884918 tgaaagaaaaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaa 9884865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 6539640 - 6539693
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| |||||||| ||||||||| ||| |||||||||||| |||||||    
T  6539640 tgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaa 6539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 15928155 - 15928200
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaat 84  Q
    |||||||||| |||||||||||||||||| ||| |||||| |||||    
T  15928155 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaat 15928200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 23332969 - 23333009
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtca 103  Q
    |||||||||||| ||||||||||||| |||| |||||||||    
T  23332969 tgtgatattatgattgaccaatatcatcaactacaatgtca 23333009  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 7755411 - 7755347
Alignment:
Q  41 aaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||||||| ||| |||||||| ||||| ||| |||||| ||||| ||||||||||||||||||||    
T  7755411 aaagaaaaagaaaaaagccacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 7755347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 39819140 - 39819087
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    |||||||||| |||||||||||||||||| ||| |||||| ||||| |||||||    
T  39819140 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 39819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 12918613 - 12918557
Alignment:
Q  36 ttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaa 92  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||| ||||| |||||||    
T  12918613 ttatgaaagaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaa 12918557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 15562275 - 15562215
Alignment:
Q  45 aaaaggaagaaagccacatgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    |||| |||||||| ||||||||| ||| |||||| ||||| ||| ||||||||||||||||    
T  15562275 aaaaagaagaaagtcacatgtgacattgtggttggccaatgtcatcaaccacaatgtcacc 15562215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 43465163 - 43465112
Alignment:
Q  39 tgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcacc 90  Q
    ||||| |||| |||||||||||||||||||||| |||||| ||||| |||||    
T  43465163 tgaaaaaaaaagaagaaagccacatgtgatattgtggttggccaatgtcacc 43465112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 33763507 - 33763469
Alignment:
Q  67 atattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  33763507 atattgtggttgaccaatgtcaccaaccacaatgtcacc 33763469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 33763536 - 33763589
Alignment:
Q  36 ttatgaaagaaaaggaagaaagccacatgtgatattatggttgaccaatatcac 89  Q
    ||||||||||||| |||||||| ||| ||||||||| | |||||||||| ||||    
T  33763536 ttatgaaagaaaaagaagaaaggcacttgtgatattgtagttgaccaatgtcac 33763589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 1866 - 1824
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||    
T  1866 tgtgatattgtggttgatcaatgtcaccaaccacaatgtcacc 1824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 205 - 247
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtcacc 105  Q
    ||||||||| ||||||| |||| ||||||||||||||||||||    
T  205 tgtgatattgtggttgatcaatgtcaccaaccacaatgtcacc 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 26553 - 26512
Alignment:
Q  63 tgtgatattatggttgaccaatatcaccaaccacaatgtcac 104  Q
    ||||||||| || ||||||||| |||||||||||||||||||    
T  26553 tgtgatattgtgtttgaccaatgtcaccaaccacaatgtcac 26512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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