View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_6 (Length: 613)

Name: NF1705_low_6
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_6
NF1705_low_6
[»] chr4 (3 HSPs)
chr4 (16-604)||(8750385-8750975)
chr4 (398-598)||(13776220-13776420)
chr4 (398-550)||(13773970-13774122)
[»] chr3 (2 HSPs)
chr3 (398-598)||(4532905-4533105)
chr3 (398-550)||(4530654-4530806)
[»] chr7 (5 HSPs)
chr7 (398-501)||(21769272-21769375)
chr7 (398-598)||(8731388-8731588)
chr7 (450-550)||(18395146-18395246)
chr7 (493-542)||(24040414-24040463)
chr7 (398-550)||(28610453-28610605)
[»] chr1 (5 HSPs)
chr1 (398-598)||(10911123-10911323)
chr1 (450-550)||(13011565-13011665)
chr1 (398-550)||(10908927-10909079)
chr1 (415-484)||(4820969-4821038)
chr1 (415-484)||(4832769-4832838)
[»] chr2 (4 HSPs)
chr2 (468-598)||(42275820-42275950)
chr2 (434-602)||(39816242-39816419)
chr2 (450-550)||(42278062-42278162)
chr2 (531-604)||(31488901-31488974)
[»] chr5 (1 HSPs)
chr5 (531-593)||(22600657-22600719)
[»] chr8 (1 HSPs)
chr8 (531-604)||(36377559-36377632)


Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Original strand, 8750385 - 8750975
Alignment:
Q  16 actttgtctatgccttatcaacaattcaacttccgctctctaattcagcttcaagatctctctcactttctctctctatgaagtatttagagcattacct 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8750385 actttgtctatgccttatcaacaattcaacttcctctctctaattcagcttcaagatctctttcactttctctctctatgaagtatttagagcattacct 8750484  T
Q  116 ataggtattgtgatgtggaagggttatcggtgtaaaggtttggagtagcctataacttgatgaaattggtaattttatagtatgagtataagtaatatct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  8750485 ataggtattgtgatgtggaagggttatcggtgtaaaggtttggagtagcctataacttgatgaaatttgtaattttatagtatgagtataagtaatatgt 8750584  T
Q  216 atgaagtgttcataattatagataattatctgtcgaaaaaataattatagaaaattataggaaggaattaatatagcatgagataccttgctaagatgca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8750585 atgaagtgttcataattatagataattatctgtcgaaaaaataattatagaaaattataggaaggaattaatatagcatgagataccttgctaagatgca 8750684  T
Q  316 tggagctgaatagagagagggagtgagaatgagttgaaaaatgtataatagaatgcatgttgctag--annnnnnnnnnnnnnntatctagagatattat 413  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||                  ||| ||||||||||||    
T  8750685 tggagctgaatatagagagagagtgagaatgagttgaaaaatgtatgatagaatgcatgttgctagcatttcttttttaagaaatatttagagatattat 8750784  T
Q  414 aatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaagttcttccacattttaa 513  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  8750785 aatctactttatgaagctacaaagttatagcgatattaagacgctcctagttattatgactatattcagtagtgatcttgaaagttcttccacattttaa 8750884  T
Q  514 aagttttataatattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatattttcttct 604  Q
    |||| | |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  8750885 aagtgtcataatattctatattattcttcatcattctttagcattttcttcgggttggaagagactcgtccccgagtcaatattttcttct 8750975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 598
Target Start/End: Complemental strand, 13776420 - 13776220
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  13776420 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 13776321  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatatt 597  Q
    |||||| |||| || ||||||  ||||| |||||||||||||||||| ||||| || |||| || | ||||||||||||||||||||  ||||||| |||    
T  13776320 ttcttcgacatcttgaaagttccataatgttctatattattctccataattctctatcattctccccgggttggaagagactcgtcctcgagtcaagatt 13776221  T
Q  598 t 598  Q
    |    
T  13776220 t 13776220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 550
Target Start/End: Complemental strand, 13774122 - 13773970
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  13774122 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 13774023  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattct 550  Q
    |||||| |||| || |||||   ||||| |||||||||||||||||| |||||    
T  13774022 ttcttcgacatcttgaaagtcccataatgttctatattattctccataattct 13773970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 398 - 598
Target Start/End: Complemental strand, 4533105 - 4532905
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  4533105 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 4533006  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatatt 597  Q
    |||||| |||| || ||||||  ||||| |||||||||||||||||| ||||| || |||| || | ||||||||||||||||||||  ||||||| |||    
T  4533005 ttcttcgacatcttgaaagttccataatgttctatattattctccataattctctatcattctccccgggttggaagagactcgtcctcgagtcaagatt 4532906  T
Q  598 t 598  Q
    |    
T  4532905 t 4532905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 550
Target Start/End: Complemental strand, 4530806 - 4530654
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | || ||| |||||| |||||  |||||||||    
T  4530806 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactacgacattattttgtaatattcttgaaag 4530707  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattct 550  Q
    |||||| |||| || ||||||  ||||| |||||||||||||||||| |||||    
T  4530706 ttcttcgacatcttgaaagttccataatgttctatattattctccataattct 4530654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 398 - 501
Target Start/End: Original strand, 21769272 - 21769375
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||| ||  ||||| |||||| ||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  21769272 tatctagagatactaatatctagttcatgtagctagaaagttctaaggatattaagatgctcctagttattatgactttatttagtagtattcttgaaag 21769371  T
Q  498 ttct 501  Q
    ||||    
T  21769372 ttct 21769375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 398 - 598
Target Start/End: Original strand, 8731388 - 8731588
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  8731388 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 8731487  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatatt 597  Q
    |||||| |||| |||||||||  ||||| |||||||||||||||||| ||||| || |||| ||    |||||||||||||||||||  ||||||| |||    
T  8731488 ttcttcgacatcttaaaagttccataatgttctatattattctccataattctctatcattctccacaggttggaagagactcgtcctcgagtcaagatt 8731587  T
Q  598 t 598  Q
    |    
T  8731588 t 8731588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 550
Target Start/End: Complemental strand, 18395246 - 18395146
Alignment:
Q  450 taagatgctcctagttattatgactttatttagtaatgatcttgaaagttcttccacattttaaaagttttataatattctatattattctccatcattc 549  Q
    ||||||| ||||| | | ||||||||||||| |||||  ||||||||||||||| |||| || ||||||  ||||| ||||||||||| |||||| ||||    
T  18395246 taagatgatcctaatcactatgactttattttgtaatattcttgaaagttcttcgacatcttgaaagttccataatgttctatattatcctccataattc 18395147  T
Q  550 t 550  Q
    |    
T  18395146 t 18395146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 542
Target Start/End: Complemental strand, 24040463 - 24040414
Alignment:
Q  493 gaaagttcttccacattttaaaagttttataatattctatattattctcc 542  Q
    |||||||||||||||| |||||||||| |||||||||| ||| |||||||    
T  24040463 gaaagttcttccacatcttaaaagtttcataatattctctatgattctcc 24040414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 550
Target Start/End: Original strand, 28610453 - 28610605
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | ||||||||||||| |||||  | |||||||    
T  28610453 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgactttattttgtaatatttttgaaag 28610552  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattct 550  Q
     ||||| |||| || ||||||  ||||| || |||||| |||||||| |||||    
T  28610553 ctcttcgacatcttgaaagttccataatgttatatattcttctccataattct 28610605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 398 - 598
Target Start/End: Complemental strand, 10911323 - 10911123
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  10911323 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 10911224  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatatt 597  Q
    |||||| |||| |||||||||  ||||| |||||||||||||||||| ||||| || |||| ||    |||||||||||||||||||  ||||||| |||    
T  10911223 ttcttcgacatcttaaaagttccataatgttctatattattctccataattctctatcattctccacaggttggaagagactcgtcctcgagtcaagatt 10911124  T
Q  598 t 598  Q
    |    
T  10911123 t 10911123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 550
Target Start/End: Complemental strand, 13011665 - 13011565
Alignment:
Q  450 taagatgctcctagttattatgactttatttagtaatgatcttgaaagttcttccacattttaaaagttttataatattctatattattctccatcattc 549  Q
    ||||||| ||||| | | ||||||||||||| |||||  ||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||| ||||    
T  13011665 taagatgatcctaatcactatgactttattttgtaatattcttgaaagttcttcgacatcttaaaagtttcataatgttctatattattctccataattc 13011566  T
Q  550 t 550  Q
    |    
T  13011565 t 13011565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 550
Target Start/End: Complemental strand, 10909079 - 10908927
Alignment:
Q  398 tatctagagatattataatctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaag 497  Q
    |||||||||||  ||  ||||| ||||||   ||| |||||| ||| |||  ||||||| ||||| | | |||||| |||||| |||||  |||||||||    
T  10909079 tatctagagattctaatatctagttcatgtgcctagaaagttctagagatgctaagatgatcctaatcactatgacattattttgtaatattcttgaaag 10908980  T
Q  498 ttcttccacattttaaaagttttataatattctatattattctccatcattct 550  Q
    |||||| |||| |||||||||  ||||| |||||||||||||||||| |||||    
T  10908979 ttcttcgacatcttaaaagttccataatgttctatattattctccataattct 10908927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 4821038 - 4820969
Alignment:
Q  415 atctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagta 484  Q
    ||||| || ||| ||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  4821038 atctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttatttagta 4820969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 4832838 - 4832769
Alignment:
Q  415 atctacttcatgaagctacaaagttatagcgatattaagatgctcctagttattatgactttatttagta 484  Q
    ||||| || ||| ||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  4832838 atctagtttatgtagctaaaaagttctagaggtatcaagatgctcctagttattatgactttatttagta 4832769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 468 - 598
Target Start/End: Original strand, 42275820 - 42275950
Alignment:
Q  468 tatgactttatttagtaatgatcttgaaagttcttccacattttaaaagttttataatattctatattattctccatcattctttagcattttctctggg 567  Q
    |||||| |||||| |||||  ||||||||||||||| |||| |||||||||  ||||| |||||||||||||||||| ||||| || |||| ||   |||    
T  42275820 tatgacattattttgtaatattcttgaaagttcttcgacatcttaaaagttccataatgttctatattattctccataattctctatcattctccacggg 42275919  T
Q  568 ttggaagagactcgtccctgagtcaatattt 598  Q
    ||||||||||||| |||  ||||||| ||||    
T  42275920 ttggaagagactcatcctcgagtcaagattt 42275950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 434 - 602
Target Start/End: Original strand, 39816242 - 39816419
Alignment:
Q  434 aaagttatagcgatattaagatgctcctagttattatgactttatttagtaatgatcttgaaagttct---------tccacattttaaaagttttataa 524  Q
    |||||| ||| ||||| || |||||| ||||||| |||||||||||||||| |  |||||||||||||         ||||||| || ||||||  ||||    
T  39816242 aaagttctagagatataaaaatgctcatagttatcatgactttatttagtagtattcttgaaagttctaaaatattctccacatcttgaaagttccataa 39816341  T
Q  525 tattctatattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatattttctt 602  Q
    | |||||||||||||||||||||| | || |||| |||| |||||||| |||||||||||  ||| ||| ||||||||    
T  39816342 tgttctatattattctccatcattttctatcattctctccgggttggatgagactcgtcctcgagacaagattttctt 39816419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 550
Target Start/End: Original strand, 42278062 - 42278162
Alignment:
Q  450 taagatgctcctagttattatgactttatttagtaatgatcttgaaagttcttccacattttaaaagttttataatattctatattattctccatcattc 549  Q
    ||||||| ||||| | | |||||| |||||| |||||  ||||||||||||||| |||| |||||||||  ||||| |||||||||||||||||| ||||    
T  42278062 taagatgatcctaatcactatgacattattttgtaatattcttgaaagttcttcgacatcttaaaagttccataatgttctatattattctccataattc 42278161  T
Q  550 t 550  Q
    |    
T  42278162 t 42278162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 604
Target Start/End: Complemental strand, 31488974 - 31488901
Alignment:
Q  531 atattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatattttcttct 604  Q
    |||||||||| || |||||| || |||| |||| ||||||||||||||||||||  |||||||  |||||||||    
T  31488974 atattattcttcaccattctctatcattctctccgggttggaagagactcgtcctcgagtcaagcttttcttct 31488901  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 531 - 593
Target Start/End: Complemental strand, 22600719 - 22600657
Alignment:
Q  531 atattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaa 593  Q
    |||||||||| ||||||||| || |||| || | ||||||||||||||||||||  |||||||    
T  22600719 atattattcttcatcattctctatcattctccccgggttggaagagactcgtcctcgagtcaa 22600657  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 36377559 - 36377632
Alignment:
Q  531 atattattctccatcattctttagcattttctctgggttggaagagactcgtccctgagtcaatattttcttct 604  Q
    |||||||||| || |||||| || |||| || | ||||||||||||||||||||  |||||||  |||||||||    
T  36377559 atattattcttcaccattctctatcattctccccgggttggaagagactcgtcctcgagtcaagcttttcttct 36377632  T

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