View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_61 (Length: 317)

Name: NF1705_low_61
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_61
NF1705_low_61
[»] chr5 (1 HSPs)
chr5 (18-317)||(9839428-9839727)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 9839727 - 9839428
Alignment:
Q  18 catgtttggtgtttgtgtggcatactacttatgactattagtaatttgatttattttgcagaaatacatgaagatgagaaatacttacattcatctactg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9839727 catgtttggtgtttgtgtggcatactacttatgactattagtaatttgatttattttgcagaaatacatgaagatgagaaatacttacattcatctactg 9839628  T
Q  118 gttgagttaacagaggtaacgactttttcgatgatggtttaaagacaaaagacactattgttttggatagtctcccaaatatctttgttttggttggcca 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9839627 gttgagttaacagaggtaacgactttttcgaagatggtttaaagacaaaagacactattgttttggatagtctcccaaatatctttgttttggttggcca 9839528  T
Q  218 gcagtttgaccccaaatgcaagctcacacaaatggtagagtaaaaatgcttttgctactagcgtaatttagtgcatagtcttttcagaatccagaataat 317  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9839527 gcagtttgacctcaaatgcaagctcacacaaatggtacagtaaaaatgcttttgctactagcgtaatttagtgcatagtcttttcagaatccataataat 9839428  T

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