View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_62 (Length: 314)
Name: NF1705_low_62
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 31821771 - 31822070
Alignment:
| Q |
1 |
agtgttgttaatgttgattacatttgtataaacttgttattaaggttcgaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttg |
100 |
Q |
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| T |
31821771 |
agtgttgttaatgttgattacatttgtataaacttgttattaaggttcaaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttg |
31821870 |
T |
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| Q |
101 |
gagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctc |
200 |
Q |
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| T |
31821871 |
gagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctc |
31821970 |
T |
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| Q |
201 |
tattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccatcataatgattaatcacaagtataat |
300 |
Q |
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| T |
31821971 |
tattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataat |
31822070 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 35688742 - 35688829
Alignment:
| Q |
68 |
agaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
155 |
Q |
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| T |
35688742 |
agaagattagagggaagaggttaatgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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