View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_67 (Length: 303)
Name: NF1705_low_67
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 6507889 - 6508134
Alignment:
| Q |
1 |
atcatgtcctttaagggaagtgtttgaggttctagaggttgacatggttatgaaaatggtgagaaagtgtccaagggaagaagaatatgacaagtgaatt |
100 |
Q |
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| T |
6507889 |
atcatgtcctttaagggaagtgtttgaggttctagaggttgacatggttatgaaaatggtgagaaag--------ggaagaagaatacgacaagtgaatt |
6507980 |
T |
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| Q |
101 |
gaggagagagcatagaatagaatagaatagaatggaagtagtggcaagtcttttaaagacactgacttgatcattgagtgaaggaaaaggacattatgtt |
200 |
Q |
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| T |
6507981 |
gaggagagagtagaga---gcatagaatagaatggaagtagtggcaagtcttttaaagacactaacttgatcattgagagaaggaaaaagacattatgtt |
6508077 |
T |
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| Q |
201 |
aatgtcnnnnnnnnaaatgcaaaaatatattaaatatcaaaccaatcaagagtacaa |
257 |
Q |
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| T |
6508078 |
aatgtcttttttttaaaggcaaaaatatattaaatatcaaaccaatcaagagtacaa |
6508134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 6508153 - 6508187
Alignment:
| Q |
255 |
caaacaacacaaatacaaactctttttagtataat |
289 |
Q |
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| T |
6508153 |
caaacaacacaaatacaaactctttttagtataat |
6508187 |
T |
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