View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_68 (Length: 303)
Name: NF1705_low_68
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_68 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 29008557 - 29008853
Alignment:
| Q |
7 |
accttaacctaattaatactctaatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaaatctttaccaaaatatatagaaagttt |
106 |
Q |
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| T |
29008557 |
accttaacctaattaatactctaatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaattctttaccaaaatatatacaaagttt |
29008656 |
T |
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| Q |
107 |
cagaaaattcaaagattaataatataagatcgtaaccgttttttgcattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgtacc |
206 |
Q |
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| T |
29008657 |
cagaaaattcaaagattaataatataagatcgtaaccgttttttgtattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgtacc |
29008756 |
T |
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| Q |
207 |
gagatcgtcgccgacgttgacgctcacagtggaagcccaaacctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttacca |
303 |
Q |
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| T |
29008757 |
gagatcgtcgccgacgttgaagctctcagtggaagcccaatcctgcatattggattcaagatcccaggcggaagcaccaccaacggtgtggttacca |
29008853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 21408649 - 21408428
Alignment:
| Q |
7 |
accttaacctaattaatactctaatcattacctagtttgtaagcacttgctagatttaacaaaatttcagaaaatctttaccaaaatatatagaaagttt |
106 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
21408649 |
accttaacctaattaatactctaatcattacttagtttgcaagcacttgctagattttacaaaattttagaaaatctttaccaaaaaatatacaaagttt |
21408550 |
T |
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| Q |
107 |
cagaaaattcaaagattaataatataagatcgtaaccg--ttttttgcattttcacgaaaatgattctgttgaaatcaattcaagacatgaagaaacgta |
204 |
Q |
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|||||||||||||||||||| ||| ||||||||||| | ||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
21408549 |
cagaaaattcaaagattaattatacaagatcgtaactgttttttttgtgttttcacaaaaatgattctattgaaa-----tcaagacatgaagaaacgta |
21408455 |
T |
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| Q |
205 |
ccgagatcgtcgccgacgttgacgctc |
231 |
Q |
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| T |
21408454 |
ccaaaattgtcaccgacattgaagctc |
21408428 |
T |
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