View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_7 (Length: 600)
Name: NF1705_low_7
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 34816822 - 34816242
Alignment:
| Q |
1 |
cacagttgtcaaacatcataagaagaatcgaactcataccttgaagcatacgagcttcgccattttcaagatcttccagctctagagtatcaaggtattc |
100 |
Q |
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| T |
34816822 |
cacagttgtcaaacatcataagaagaatcgaactcataccttgaagcatacgagcttcgccattttcaagatcttccagctctagagtatcaa----ttc |
34816727 |
T |
|
| Q |
101 |
attccttggaaacatgtgaaaaaatcatccaaaattcatgacccaactctttaccggttcccaccctgccccatgtctgaaatgacacactctagtcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816726 |
attccttggaaacatgtgaaaaaatcatccaaaattcatgacccaactctttaccggttcccaccctgccccatgtctgaaatgacacactctagtcatt |
34816627 |
T |
|
| Q |
201 |
gttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactcccaccatttcccattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816626 |
gttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgtactcccaccatttcccattt |
34816527 |
T |
|
| Q |
301 |
tttccgcatcatacccttgaaccaatcctctcccccgacccccattacccacaccacacaagtccttccaccacaatgaagctagactcaatctgtcaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34816526 |
tttccgcatcatacccttgaaccaatcctctcccccaacccccattacccacaccacacaagtccttccaccacaatgaagctagactcaatctgtcaaa |
34816427 |
T |
|
| Q |
401 |
attagataaatccgagttagccacaatactaactttgtacttggcatataaggcaccttttgcaatgagaatcacccttgcagtagtactctcattaatg |
500 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34816426 |
attagataaatccgagttagccacaataccaactttgtacttggc--atacggcaccttttgcaatgagaatcacccttgcagcagtactctcattaatg |
34816329 |
T |
|
| Q |
501 |
atattgggatagaacccaaaatagaattgatgtgaacgactctaccactgagactaacatatatatcctcaacgatcgcaatttgat |
587 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34816328 |
atgttgggatagaacccaaaatagaattgatgtgaacaactctaccactgagactaacatatgtatcctcaacgatcgcaatttgat |
34816242 |
T |
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