View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_70 (Length: 298)
Name: NF1705_low_70
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_70 |
 | |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 44924535 - 44924817
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44924535 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaatgaaatcataattta |
44924634 |
T |
|
| Q |
116 |
atcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaagga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
44924635 |
atcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcacttcacacgaccaggaagaccaccgccgaaagga |
44924734 |
T |
|
| Q |
216 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44924735 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
44924817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 6908562 - 6908844
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908562 |
ggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagggcagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
6908661 |
T |
|
| Q |
116 |
atcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaagga |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
6908662 |
atcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagcctttaagttctttcgtttcacacgaccaggaagaccaccgccgaaagga |
6908761 |
T |
|
| Q |
216 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6908762 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
6908844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 37 - 295
Target Start/End: Complemental strand, 6901692 - 6901434
Alignment:
| Q |
37 |
gcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataatttaatcttcatcctcctcatcacc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
6901692 |
gcatgatagaaaatctaaagtctaggacagatataaaaaggcgagagcaaggatctaagaaaatgaaaatcataatttaatcttcatcctcctcatcacc |
6901593 |
T |
|
| Q |
137 |
gtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaaggacttgtgagtgaaaagtcaatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
6901592 |
atcaccaccggaagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatggacttgtgagtgaaaagtcaatg |
6901493 |
T |
|
| Q |
237 |
tgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaac |
295 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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|
| T |
6901492 |
tgcttctgtgaatcaacccttaccatgaaggatgggatgttaacaacctgcctcccaac |
6901434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 111 - 298
Target Start/End: Original strand, 44927080 - 44927267
Alignment:
| Q |
111 |
atttaatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccga |
210 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |||||||| |||||| ||| ||||||||||||| || | |
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|
| T |
44927080 |
atttaatcttcatcctcctcatctccatcaccaccggaagccttcttggctgcagccttaaggttctttcacttcacgcgaccaggaagaccaccaccaa |
44927179 |
T |
|
| Q |
211 |
aaggacttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
44927180 |
agggacttgtgagggaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttaacaacctgcctcccaaccct |
44927267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 202424 - 202141
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataa-ttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
202424 |
ggaaaatggtaaaagtcatttgcatgacagaaaatctaaagtctagggcagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataaattt |
202325 |
T |
|
| Q |
115 |
aatcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaagg |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
202324 |
aatcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgaccaggaagaccaccgccgaaagg |
202225 |
T |
|
| Q |
215 |
acttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
202224 |
acttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
202141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 206676 - 206958
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
206676 |
ggaaaacggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagaaaatgaaaatcataattta |
206775 |
T |
|
| Q |
116 |
atcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaagga |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||| ||| |
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|
| T |
206776 |
atcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatgga |
206875 |
T |
|
| Q |
216 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
206876 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaacccttaccatgaaggatgggatgttcacaacctgcctcccaaccct |
206958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 24652940 - 24652658
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
24652940 |
ggaaaacggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagaaaatgaaaatcataattta |
24652841 |
T |
|
| Q |
116 |
atcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaagga |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
24652840 |
atcttcatcctcctcatcaccatcaccaccggaagccttcttggctgcagccttaaggttcttacgcttcacacgaccaggaagaccaccaccgaatgga |
24652741 |
T |
|
| Q |
216 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24652740 |
cttgtgagtgaaaagtcaatgtgcttctgtgaatcaacccttaccatgaaggatgggatgttcacaacctgcctcccaaccct |
24652658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 29514623 - 29514334
Alignment:
| Q |
15 |
aggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29514623 |
aggaaaatggtaaaagtcatatgcatgatagaaaatctaaagtctaggacagatatcaagaggctagagcaaggatctaagcaaaagaaaatcataattt |
29514524 |
T |
|
| Q |
115 |
aa------tcttcatcctcctcatcaccgtcaccaccggaagccttcttggctgcagcctttaagttctttcgcttcacacgatcaggaagaccaccgcc |
208 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||| ||| | ||||||||||| || |
|
|
| T |
29514523 |
aaatttaatcttcatcctcctcatcaccatcaccaccagaagccttcttggctgcagccttaaggttctttcgcttcacgcgaccgggaagaccaccacc |
29514424 |
T |
|
| Q |
209 |
gaaaggacttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
29514423 |
aaaaggacttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccatgaatgatgggatgttcacaacctgcctcccaaccct |
29514334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 43626322 - 43626041
Alignment:
| Q |
18 |
aaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataatttaat |
117 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43626322 |
aaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagata--aaaaggctagagcaaggatctaagtaaaagaaaatcataatttaac |
43626225 |
T |
|
| Q |
118 |
cttcatcctcctcatcaccgtcaccaccggaagccttcttggctgc-agcctttaagttctttcgcttcacacgatcaggaagaccaccgccgaaaggac |
216 |
Q |
| |
|
||||||||||||| ||| | | |||||||||||||||||||||||| || ||| | ||||||||||||||||||| ||||||||| ||| || ||||||| |
|
|
| T |
43626224 |
cttcatcctcctcgtcaacatgaccaccggaagccttcttggctgccagtcttaaggttctttcgcttcacacgaccaggaagacaaccaccaaaaggac |
43626125 |
T |
|
| Q |
217 |
ttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctca--ccatgaaggatgggatgttcaccacctgcctcccaaccct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
43626124 |
ttgtgagtgaaaagtcaatgtgcttctgtgaatcaaccctcaccccatgaaggatgggatgttaacaacctgcctcctaaccct |
43626041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 43997956 - 43998065
Alignment:
| Q |
16 |
ggaaaatggtaaaagtcatttgcatgatagaaaatctaaagtctaggacagatataaaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
115 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43997956 |
ggaaaatggtaaaagtcatatgcatcatagaaaatctaaagtctaggacagcta--aaaaggctagagcaaggatctaagcaaaagaaaatcataattta |
43998053 |
T |
|
| Q |
116 |
atcttcatcctc |
127 |
Q |
| |
|
| |||||||||| |
|
|
| T |
43998054 |
accttcatcctc |
43998065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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