View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_74 (Length: 292)
Name: NF1705_low_74
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 5564791 - 5564511
Alignment:
| Q |
1 |
atgccaaggttaatagccagagggaaaaagatatgctaaaatcctatgactatgagatattttaccaatcctattccatgtatttgtcaactagaatgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5564791 |
atgccaaggttaatagccagagggaaaaagatatgctaaaatcctatgactatgagatattttaccaatcctattccatgtatttgtcaactagaatgcc |
5564692 |
T |
|
| Q |
101 |
aactaaataactgacctgctaatcatcctaatatacagccaataacaccctaacgcaccacacccaacaacaacaatcaaaatcttttcccattatgttt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5564691 |
tactaaataactgacctgctaatcatcctaatatacagccaataacaccctaacgcaccacacccaacaacaacaatcaaaatcttttcccattatgttt |
5564592 |
T |
|
| Q |
201 |
atttaggctactatgtggatcagacgaaaccatcatattcaaactccaactcgataccaaaatacagtagttctatatgat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5564591 |
atttaggctactatgtggatcagacgaaaccatcatattcaaactccaactcgataccaaaatacagtagttctatatgat |
5564511 |
T |
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