View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_75 (Length: 288)

Name: NF1705_low_75
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_75
NF1705_low_75
[»] chr2 (1 HSPs)
chr2 (12-273)||(45401988-45402249)
[»] chr5 (1 HSPs)
chr5 (12-269)||(19611140-19611397)
[»] chr3 (3 HSPs)
chr3 (12-273)||(23361575-23361836)
chr3 (86-160)||(28696533-28696607)
chr3 (45-85)||(47351506-47351546)
[»] chr6 (1 HSPs)
chr6 (12-273)||(7599892-7600151)
[»] chr4 (4 HSPs)
chr4 (12-273)||(28462372-28462630)
chr4 (86-160)||(54188531-54188605)
chr4 (86-160)||(8570573-8570647)
chr4 (105-146)||(2550273-2550314)
[»] chr8 (2 HSPs)
chr8 (18-95)||(8835756-8835833)
chr8 (103-150)||(23241019-23241066)
[»] chr7 (3 HSPs)
chr7 (105-163)||(7710913-7710971)
chr7 (86-160)||(3367619-3367693)
chr7 (105-154)||(22884134-22884183)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 45402249 - 45401988
Alignment:
Q  12 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402249 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 45402150  T
Q  112 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402149 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 45402050  T
Q  212 gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 273  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  45402049 gctgtcttttggtagctagagctgcaatccgaagattgatatcgttgaattcttgatggttg 45401988  T

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Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 19611397 - 19611140
Alignment:
Q  12 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19611397 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaaaaattgcaaaacaggttcaaatttc 19611298  T
Q  112 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19611297 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 19611198  T
Q  212 gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatg 269  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19611197 gctgtcttttgatagctagagctgcaatccgaagatcgatatcgttgaattgttgatg 19611140  T

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Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 23361836 - 23361575
Alignment:
Q  12 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 111  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23361836 aaaggcattgcagaaagagacctctgaaatcgtatccaacactgaaacctcaaccaacaccaaaacctgcaaaaataattgcaaaacaggttcaaatttc 23361737  T
Q  112 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23361736 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 23361637  T
Q  212 gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 273  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  23361636 gctgtcttttggtagctagagctgcaatctgaagatcgatatcgttgaattattgatggttg 23361575  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 28696607 - 28696533
Alignment:
Q  86 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 160  Q
    ||||||||||||||   ||||||||||||| | ||| ||||| |||||||  || ||| ||||||||||||||||    
T  28696607 acaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 28696533  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 47351546 - 47351506
Alignment:
Q  45 atccaacaccgaaacctcaaccaacaccaaaacctgcaaaa 85  Q
    |||||||||| ||||| ||||||||||| ||||||||||||    
T  47351546 atccaacaccaaaaccgcaaccaacaccgaaacctgcaaaa 47351506  T

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Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 7600151 - 7599892
Alignment:
Q  12 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7600151 aaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 7600052  T
Q  112 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||  ||||||||||    
T  7600051 attgagacaatttatcaaacacctcctatgcaacacaataataccttggaagaaaaaacttcactgtcaaatttcacaataatacaac--gggaaacaat 7599954  T
Q  212 gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 273  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7599953 gctgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 7599892  T

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Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 28462372 - 28462630
Alignment:
Q  12 aaaggcagtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 111  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28462372 aaaggcagtgcagaaagagacctctgaaatcgtatccaacacagaaacctcaaccaacaccaaaacctgcaaaaacaattgcaaaacaggttcaaatttc 28462471  T
Q  112 attgagacaatttatcaaacacctcctatgcaacacaataataccttgcaagagaaaatttcactgtcaaatttcacaataatacaacgagggaaacaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||  ||||||||||    
T  28462472 attgagacaatttatcaaacacctcctatgcaacacaataataccttggaaga-aaaacttcactgtcaaatttcacaataatacaac--gggaaacaat 28462568  T
Q  212 gttgtcttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 273  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28462569 gctgccttttggtagctagagctgcaatccgaagatcgatatcgttgaattgttgatggttg 28462630  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 54188531 - 54188605
Alignment:
Q  86 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 160  Q
    ||||||||||||||   ||||||||||||||| ||| ||||| |||||||  || ||| ||||||||||||||||    
T  54188531 acaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgc 54188605  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 8570647 - 8570573
Alignment:
Q  86 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 160  Q
    ||||||||||||||   ||||||||||||| | ||| ||||| |||||||  || ||| ||||||||||||||||    
T  8570647 acaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgc 8570573  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 2550273 - 2550314
Alignment:
Q  105 aaatttcattgagacaatttatcaaacacctcctatgcaaca 146  Q
    ||||||||||||| ||| |||||||||||||| |||||||||    
T  2550273 aaatttcattgagtcaaattatcaaacacctcatatgcaaca 2550314  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 8835756 - 8835833
Alignment:
Q  18 agtgcagaaagagacctctgaaatcgtatccaacaccgaaacctcaaccaacaccaaaacctgcaaaaacaattgcaa 95  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  8835756 agtgcagaaagagacctttgaaatcccatccaacaccgaaacctcaaccaacacaaaaaactgcaaaaacaattgcaa 8835833  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 23241066 - 23241019
Alignment:
Q  103 tcaaatttcattgagacaatttatcaaacacctcctatgcaacacaat 150  Q
    ||||||||||||||| ||| ||||||||||| || |||||||||||||    
T  23241066 tcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 7710971 - 7710913
Alignment:
Q  105 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgcaag 163  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcataccttgcaag 7710913  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 3367619 - 3367693
Alignment:
Q  86 acaattgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataataccttgc 160  Q
    ||||||||||||||   ||||||||||||||| ||| |||||||||||||  || ||| ||||||||||||||||    
T  3367619 acaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgc 3367693  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 22884183 - 22884134
Alignment:
Q  105 aaatttcattgagacaatttatcaaacacctcctatgcaacacaataata 154  Q
    ||||||||||||| ||| ||||||||||||||  | ||||||||||||||    
T  22884183 aaatttcattgagtcaaattatcaaacacctcacacgcaacacaataata 22884134  T

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