View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_76 (Length: 288)

Name: NF1705_low_76
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_76
NF1705_low_76
[»] chr5 (38 HSPs)
chr5 (135-281)||(8755663-8755810)
chr5 (73-114)||(34171163-34171204)
chr5 (22-107)||(41845344-41845429)
chr5 (22-114)||(4011698-4011790)
chr5 (73-114)||(12167695-12167736)
chr5 (73-114)||(27810345-27810386)
chr5 (73-114)||(33585088-33585129)
chr5 (73-114)||(36660426-36660467)
chr5 (76-114)||(7388297-7388335)
chr5 (73-107)||(33822616-33822650)
chr5 (73-114)||(166762-166803)
chr5 (73-114)||(793719-793760)
chr5 (73-114)||(7731706-7731747)
chr5 (73-114)||(14980152-14980193)
chr5 (73-110)||(15400174-15400211)
chr5 (73-114)||(31557448-31557489)
chr5 (73-114)||(38982258-38982299)
chr5 (73-114)||(42329659-42329700)
chr5 (19-59)||(16886154-16886194)
chr5 (22-114)||(31889741-31889834)
chr5 (73-111)||(28640084-28640122)
chr5 (73-111)||(43257964-43258002)
chr5 (73-114)||(4371362-4371403)
chr5 (19-48)||(4833666-4833695)
chr5 (73-114)||(13066712-13066753)
chr5 (73-114)||(17674207-17674248)
chr5 (73-114)||(27658685-27658726)
chr5 (73-114)||(33741464-33741505)
chr5 (22-59)||(36783433-36783470)
chr5 (73-114)||(39059805-39059846)
chr5 (19-47)||(166684-166712)
chr5 (19-47)||(793639-793667)
chr5 (19-47)||(31557376-31557404)
chr5 (19-47)||(33585008-33585036)
chr5 (19-47)||(33822536-33822564)
chr5 (19-47)||(36296167-36296195)
chr5 (19-47)||(42329579-42329607)
chr5 (19-47)||(43257895-43257923)
[»] chr7 (36 HSPs)
chr7 (22-114)||(18886668-18886760)
chr7 (73-114)||(3681036-3681077)
chr7 (73-114)||(28044245-28044286)
chr7 (19-57)||(32275275-32275313)
chr7 (73-114)||(18733452-18733493)
chr7 (73-114)||(22597229-22597270)
chr7 (73-114)||(31416865-31416906)
chr7 (73-114)||(40298846-40298887)
chr7 (73-107)||(5723009-5723043)
chr7 (73-111)||(19920385-19920423)
chr7 (73-114)||(36447715-36447756)
chr7 (73-114)||(36836058-36836099)
chr7 (73-114)||(43813458-43813499)
chr7 (19-59)||(22627389-22627429)
chr7 (19-57)||(5723082-5723120)
chr7 (73-107)||(22627460-22627494)
chr7 (73-111)||(26527510-26527548)
chr7 (73-111)||(30833207-30833245)
chr7 (76-114)||(32873280-32873318)
chr7 (76-114)||(36447187-36447225)
chr7 (73-111)||(40805026-40805064)
chr7 (73-107)||(42044093-42044127)
chr7 (73-114)||(1103483-1103524)
chr7 (73-114)||(19906413-19906454)
chr7 (73-114)||(30514972-30515013)
chr7 (73-114)||(32345949-32345990)
chr7 (22-59)||(34002171-34002208)
chr7 (73-114)||(41906047-41906088)
chr7 (73-114)||(42121549-42121590)
chr7 (73-114)||(42259661-42259702)
chr7 (19-47)||(17869327-17869355)
chr7 (19-47)||(19277080-19277108)
chr7 (19-59)||(19906492-19906532)
chr7 (19-47)||(29001599-29001627)
chr7 (19-47)||(39117523-39117551)
chr7 (19-59)||(40298925-40298965)
[»] chr8 (35 HSPs)
chr8 (19-114)||(38329089-38329184)
chr8 (22-107)||(7129306-7129391)
chr8 (75-114)||(7612496-7612535)
chr8 (73-111)||(8382591-8382629)
chr8 (73-114)||(1774173-1774214)
chr8 (73-114)||(11257540-11257581)
chr8 (73-114)||(36915365-36915406)
chr8 (19-114)||(8471279-8471376)
chr8 (73-112)||(3095617-3095656)
chr8 (73-107)||(16208955-16208989)
chr8 (76-114)||(32061540-32061578)
chr8 (73-107)||(34168319-34168353)
chr8 (73-114)||(9022393-9022434)
chr8 (73-114)||(22601134-22601175)
chr8 (73-114)||(42946120-42946161)
chr8 (74-114)||(11336122-11336162)
chr8 (73-113)||(30788934-30788974)
chr8 (73-104)||(8107273-8107304)
chr8 (19-58)||(11257618-11257657)
chr8 (73-112)||(34461698-34461737)
chr8 (76-114)||(2803354-2803392)
chr8 (19-57)||(26439045-26439083)
chr8 (73-107)||(27416506-27416540)
chr8 (73-107)||(32326839-32326873)
chr8 (73-114)||(3203325-3203366)
chr8 (73-114)||(5588587-5588628)
chr8 (22-59)||(7612575-7612612)
chr8 (73-114)||(14541859-14541900)
chr8 (73-114)||(27109934-27109975)
chr8 (73-114)||(29931345-29931386)
chr8 (73-114)||(35052469-35052510)
chr8 (73-114)||(45187398-45187439)
chr8 (19-59)||(8382513-8382553)
chr8 (19-47)||(34168247-34168275)
chr8 (19-47)||(34461617-34461645)
[»] chr4 (41 HSPs)
chr4 (22-114)||(50072276-50072368)
chr4 (22-114)||(21045151-21045244)
chr4 (22-114)||(38692409-38692501)
chr4 (73-114)||(31941553-31941594)
chr4 (73-114)||(47321139-47321180)
chr4 (22-114)||(51930595-51930687)
chr4 (23-114)||(32141028-32141119)
chr4 (73-111)||(45520573-45520611)
chr4 (73-114)||(52732594-52732635)
chr4 (73-111)||(3093351-3093389)
chr4 (73-107)||(45903521-45903555)
chr4 (73-114)||(1868214-1868255)
chr4 (73-114)||(15501261-15501302)
chr4 (73-114)||(19282526-19282567)
chr4 (70-111)||(29290003-29290044)
chr4 (73-114)||(29840070-29840111)
chr4 (73-114)||(34124290-34124331)
chr4 (73-114)||(37445655-37445696)
chr4 (19-114)||(39671144-39671238)
chr4 (73-114)||(56556369-56556410)
chr4 (19-59)||(19849158-19849198)
chr4 (73-105)||(30492732-30492764)
chr4 (22-114)||(31817241-31817331)
chr4 (19-59)||(34360079-34360119)
chr4 (73-112)||(55126494-55126533)
chr4 (73-111)||(31987302-31987340)
chr4 (73-114)||(6232150-6232191)
chr4 (73-114)||(6462004-6462045)
chr4 (73-114)||(6510113-6510154)
chr4 (73-114)||(19849079-19849120)
chr4 (73-114)||(22212336-22212377)
chr4 (73-114)||(24259606-24259647)
chr4 (73-114)||(35928486-35928527)
chr4 (22-59)||(44855318-44855355)
chr4 (19-56)||(45049786-45049823)
chr4 (22-59)||(52732665-52732702)
chr4 (73-114)||(54091953-54091994)
chr4 (19-47)||(11835191-11835219)
chr4 (19-47)||(24259699-24259727)
chr4 (19-47)||(45889651-45889679)
chr4 (19-47)||(54233904-54233932)
[»] chr2 (26 HSPs)
chr2 (19-114)||(34225771-34225867)
chr2 (22-113)||(4766250-4766341)
chr2 (22-111)||(14378286-14378375)
chr2 (70-114)||(45372642-45372686)
chr2 (73-114)||(33093366-33093407)
chr2 (73-114)||(45148065-45148106)
chr2 (19-114)||(14698010-14698107)
chr2 (73-112)||(7743401-7743440)
chr2 (76-114)||(24775187-24775225)
chr2 (73-114)||(4536572-4536613)
chr2 (22-59)||(29795237-29795274)
chr2 (73-114)||(29795303-29795344)
chr2 (19-59)||(37106939-37106979)
chr2 (73-108)||(40987384-40987419)
chr2 (73-107)||(4840840-4840874)
chr2 (73-114)||(775998-776039)
chr2 (73-114)||(1360175-1360216)
chr2 (73-114)||(1381748-1381789)
chr2 (73-114)||(2459771-2459812)
chr2 (73-114)||(6591963-6592004)
chr2 (22-59)||(7743478-7743515)
chr2 (73-114)||(10580971-10581012)
chr2 (73-114)||(43344334-43344375)
chr2 (73-114)||(43388770-43388811)
chr2 (19-47)||(2459864-2459892)
chr2 (19-47)||(33093459-33093487)
[»] chr1 (39 HSPs)
chr1 (19-114)||(24041059-24041155)
chr1 (19-114)||(84553-84648)
chr1 (20-114)||(38132226-38132322)
chr1 (19-113)||(1430572-1430666)
chr1 (19-109)||(10690990-10691080)
chr1 (73-114)||(11650056-11650097)
chr1 (73-114)||(43738367-43738408)
chr1 (76-114)||(15647177-15647215)
chr1 (73-107)||(40061010-40061044)
chr1 (73-111)||(43105694-43105732)
chr1 (19-107)||(43755058-43755145)
chr1 (19-57)||(48259898-48259936)
chr1 (73-107)||(50158420-50158454)
chr1 (73-114)||(5317690-5317731)
chr1 (73-114)||(6332164-6332205)
chr1 (73-114)||(9552443-9552484)
chr1 (73-114)||(12002244-12002285)
chr1 (73-114)||(15698864-15698905)
chr1 (73-114)||(26252116-26252157)
chr1 (73-114)||(44583770-44583811)
chr1 (73-114)||(48259967-48260008)
chr1 (73-113)||(1428865-1428905)
chr1 (73-109)||(2245789-2245825)
chr1 (73-113)||(11134574-11134614)
chr1 (75-114)||(22664937-22664976)
chr1 (73-107)||(45377263-45377297)
chr1 (19-57)||(50349898-50349936)
chr1 (73-114)||(2459006-2459047)
chr1 (73-114)||(12851739-12851780)
chr1 (73-114)||(17806488-17806529)
chr1 (73-114)||(26582923-26582964)
chr1 (73-106)||(52403482-52403515)
chr1 (19-47)||(254946-254974)
chr1 (79-111)||(6377396-6377428)
chr1 (19-47)||(12002335-12002363)
chr1 (19-47)||(17919855-17919883)
chr1 (19-47)||(26252209-26252237)
chr1 (73-101)||(28751521-28751549)
chr1 (19-47)||(37437439-37437467)
[»] chr3 (50 HSPs)
chr3 (22-113)||(53716029-53716120)
chr3 (73-114)||(19552539-19552580)
chr3 (73-111)||(1341033-1341071)
chr3 (73-111)||(45095555-45095593)
chr3 (73-114)||(2568116-2568157)
chr3 (73-114)||(3000751-3000792)
chr3 (73-114)||(26965612-26965653)
chr3 (73-114)||(32304018-32304059)
chr3 (73-114)||(34059875-34059916)
chr3 (73-114)||(36771680-36771721)
chr3 (73-114)||(44648514-44648555)
chr3 (73-114)||(46363124-46363165)
chr3 (22-114)||(790095-790187)
chr3 (73-107)||(25722574-25722608)
chr3 (19-107)||(35239392-35239479)
chr3 (73-114)||(83295-83336)
chr3 (73-114)||(25061703-25061744)
chr3 (73-114)||(37225708-37225749)
chr3 (73-114)||(43580474-43580515)
chr3 (19-59)||(1340964-1341004)
chr3 (73-113)||(27483297-27483337)
chr3 (19-59)||(36771611-36771651)
chr3 (33-114)||(52202364-52202445)
chr3 (76-114)||(2988725-2988763)
chr3 (73-111)||(41287078-41287116)
chr3 (76-114)||(44854314-44854352)
chr3 (22-59)||(3000831-3000868)
chr3 (73-114)||(5244585-5244626)
chr3 (73-114)||(13485918-13485959)
chr3 (73-114)||(15514839-15514880)
chr3 (73-114)||(20512610-20512651)
chr3 (73-114)||(22730924-22730965)
chr3 (22-59)||(26965546-26965583)
chr3 (22-59)||(27027811-27027848)
chr3 (73-114)||(43169333-43169374)
chr3 (73-114)||(49470788-49470829)
chr3 (73-114)||(51381720-51381761)
chr3 (73-114)||(54933318-54933359)
chr3 (19-47)||(2568047-2568075)
chr3 (19-59)||(4391982-4392022)
chr3 (19-59)||(16240654-16240694)
chr3 (19-59)||(25061773-25061813)
chr3 (19-47)||(25722494-25722522)
chr3 (19-59)||(27483228-27483268)
chr3 (73-113)||(38457460-38457500)
chr3 (19-59)||(38457538-38457578)
chr3 (19-47)||(41287168-41287196)
chr3 (19-59)||(43599865-43599905)
chr3 (19-47)||(51381816-51381844)
chr3 (19-47)||(54933238-54933266)
[»] chr6 (25 HSPs)
chr6 (73-114)||(1924777-1924818)
chr6 (73-114)||(4132088-4132129)
chr6 (73-114)||(32258720-32258761)
chr6 (73-107)||(3015921-3015955)
chr6 (73-114)||(4123968-4124009)
chr6 (73-114)||(29915539-29915580)
chr6 (73-114)||(29927205-29927246)
chr6 (73-114)||(31275755-31275796)
chr6 (22-59)||(1924712-1924749)
chr6 (73-114)||(6140598-6140639)
chr6 (73-114)||(6143082-6143123)
chr6 (73-114)||(8052343-8052384)
chr6 (73-114)||(10494875-10494916)
chr6 (21-58)||(12828718-12828755)
chr6 (73-114)||(12828794-12828835)
chr6 (73-114)||(17345249-17345290)
chr6 (73-114)||(19689947-19689988)
chr6 (73-114)||(30627089-30627130)
chr6 (73-114)||(34439526-34439567)
chr6 (73-114)||(34576542-34576583)
chr6 (19-59)||(4123891-4123930)
chr6 (19-59)||(4131981-4132020)
chr6 (73-113)||(23936695-23936735)
chr6 (19-47)||(31275676-31275704)
chr6 (19-47)||(34576635-34576663)
[»] scaffold0519 (2 HSPs)
scaffold0519 (73-114)||(7812-7852)
scaffold0519 (19-58)||(7735-7774)
[»] scaffold0194 (1 HSPs)
scaffold0194 (73-114)||(8156-8197)
[»] scaffold0047 (1 HSPs)
scaffold0047 (73-114)||(70568-70609)
[»] scaffold0003 (1 HSPs)
scaffold0003 (73-114)||(321724-321765)
[»] scaffold0189 (1 HSPs)
scaffold0189 (76-114)||(13175-13213)
[»] scaffold0072 (1 HSPs)
scaffold0072 (19-57)||(12116-12154)
[»] scaffold0565 (1 HSPs)
scaffold0565 (78-114)||(10074-10110)
[»] scaffold0238 (1 HSPs)
scaffold0238 (19-47)||(16074-16102)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 135 - 281
Target Start/End: Original strand, 8755663 - 8755810
Alignment:
Q  135 attttgaaacggagggagtactatttagtcttttcactcgctgatccc-atatgttatgaaaaatttgattggaactcgaaactcaatatttataggatc 233  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8755663 attttaaaacggagggagtactatttagtattttcacttgctcatccatatatgttatgaaaaatttgattggaactcgaaactcaatatttataggata 8755762  T
Q  234 gatgccaactggattttgggggctgtggaatctattttgcctttgctt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8755763 gatgccaactggattttgggggctgtggaatctattttgcctttgctt 8755810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 34171204 - 34171163
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34171204 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 34171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 41845344 - 41845429
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||||||||||||||||||  |||||||||  ||       || || ||||||||||||||||||||||||||||||||    
T  41845344 ttaaagttgcattgaaaattgtgtgatagaaaagttgaaagaaaaaaattaaaattgtattgaaaatgtaaagtgacattcatttt 41845429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 4011698 - 4011790
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||   ||||||||| ||       || ||||||||| | |||||||||||||| |||||||||||||||    
T  4011698 ttaaagttgcattgaaaattgtgtgagaaaaaagttggaagaaaaaaattaaagttgtatcggaaatgtaaagtgacgttcattttaaaacaa 4011790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 12167695 - 12167736
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  12167695 aagttgtattgaaaatgtagagtgacattcattttaaaacaa 12167736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 27810386 - 27810345
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  27810386 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 27810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 33585088 - 33585129
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  33585088 aagttgtattgaaaatgtaaagtgacgttcattttaaaacaa 33585129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 36660467 - 36660426
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  36660467 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36660426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 7388297 - 7388335
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  7388297 ttgtattgaaaatataaagtgacattcattttaaaacaa 7388335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 33822616 - 33822650
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  33822616 aagttgtattgaaaatgtaaagtgacattcatttt 33822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 166762 - 166803
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  166762 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 166803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 793719 - 793760
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  793719 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 793760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 7731706 - 7731747
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  7731706 aagttgttttgaaaatataaagtgacattcattttaaaacaa 7731747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 14980152 - 14980193
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  14980152 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 14980193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 15400211 - 15400174
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaa 110  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  15400211 aagttgtattggaaatgtaaagtgacattcattttaaa 15400174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 31557448 - 31557489
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  31557448 aagttgtattgaaaatgtaaaatgacattcattttgaaacaa 31557489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 38982258 - 38982299
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  38982258 aagttgtattggaaatataaagtgacattcattttaaaacaa 38982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 42329659 - 42329700
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  42329659 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 42329700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16886194 - 16886154
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  16886194 aacttaaagttgcattgaaaattgtgtgatagaaaagttgg 16886154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 31889834 - 31889741
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnn-ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||  |||||||||| |         || ||||||||||| ||||||||||||||||| ||||| ||||||    
T  31889834 ttaaagttgcattgaaaattgtgtgagagaaaagttggaaaaaaaaaaattaaagttgtattggaaatgtaaagtgacatttattttgaaacaa 31889741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 28640122 - 28640084
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  28640122 aagttgaattgaaaatgtaaagtgacatttattttaaaa 28640084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 43257964 - 43258002
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  43257964 aagttatattggaaatgtaaagtgacattcattttaaaa 43258002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 4371403 - 4371362
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||||||| |||||||| ||||||    
T  4371403 aagttgtattggaaatgtaaagtgacgttcattttgaaacaa 4371362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 4833666 - 4833695
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaa 48  Q
    ||||||||||||||||||||||||||||||    
T  4833666 aacttaaagttgcattgaaaattgtgtgaa 4833695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 13066753 - 13066712
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  13066753 aagttgtattggaaatgtaaaatgacattcattttgaaacaa 13066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 17674248 - 17674207
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||    
T  17674248 aagttttattgaaaacgtaaagtgacattcattttgaaacaa 17674207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 27658685 - 27658726
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  27658685 aagttatattggaaatgtaaagtgacattcattttgaaacaa 27658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 33741505 - 33741464
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||||||||||||| || ||||||    
T  33741505 aagttgcattgaaaatgtaaagtgacattcatattgaaacaa 33741464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 36783470 - 36783433
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36783470 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 36783433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 39059846 - 39059805
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||  ||||||||||| ||||||    
T  39059846 aagttgtattgaaaatgtaaagcaacattcattttgaaacaa 39059805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 166684 - 166712
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  166684 aacttaaagttgcattgaaaattgtgtga 166712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 793639 - 793667
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  793639 aacttaaagttgcattgaaaattgtgtga 793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 31557376 - 31557404
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  31557376 aacttaaagttgcattgaaaattgtgtga 31557404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 33585008 - 33585036
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  33585008 aacttaaagttgcattgaaaattgtgtga 33585036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 33822536 - 33822564
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  33822536 aacttaaagttgcattgaaaattgtgtga 33822564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 36296167 - 36296195
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  36296167 aacttaaagttgcattgaaaattgtgtga 36296195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 42329579 - 42329607
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  42329579 aacttaaagttgcattgaaaattgtgtga 42329607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 43257895 - 43257923
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  43257895 aacttaaagttgcattgaaaattgtgtga 43257923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 18886760 - 18886668
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||| |||||||||| ||       || ||||||||||||||||||||||||| ||||||||||||||||    
T  18886760 ttaaagttgcattgaaaattgtgtgaaagaaaagttggaagaaaaaaattaaagttgtattgaaaatgtaaagtgagattcattttaaaacaa 18886668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 3681036 - 3681077
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3681036 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 3681077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 28044245 - 28044286
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28044245 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 28044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 32275313 - 32275275
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32275313 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 32275275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 18733493 - 18733452
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18733493 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 18733452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 22597270 - 22597229
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  22597270 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 22597229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 31416865 - 31416906
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  31416865 aagttgtattgaaaatgtaaagtgatattcattttaaaacaa 31416906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 40298887 - 40298846
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  40298887 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 40298846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 5723043 - 5723009
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  5723043 aagttgtattgaaaatgtaaagtgacattcatttt 5723009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 19920385 - 19920423
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  19920385 aagttgtattggaaatgtaaagtgacattcattttaaaa 19920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 36447715 - 36447756
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  36447715 aagttgtattgaaaatataaagtgatattcattttaaaacaa 36447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 36836099 - 36836058
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  36836099 aagttgtattgaaaatgtaaagcgacattcattttgaaacaa 36836058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 43813458 - 43813499
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  43813458 aagttgtattggaaatataaagtgacattcattttaaaacaa 43813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22627389 - 22627429
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  22627389 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 22627429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 5723120 - 5723082
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  5723120 aacttaaagttgcattgaaaattgtgtgagagaaaagtt 5723082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 22627460 - 22627494
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||| |||||||||||||||||||||||    
T  22627460 aagttgtattggaaatgtaaagtgacattcatttt 22627494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 26527510 - 26527548
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  26527510 aagttgtattgaaaatgtaaaataacattcattttaaaa 26527548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 30833207 - 30833245
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  30833207 aagttgtattgaaaatgtaaaatgatattcattttaaaa 30833245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 32873280 - 32873318
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  32873280 ttgtattggaaatataaagtgacattcattttaaaacaa 32873318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 36447187 - 36447225
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  36447187 ttgtattgaaaatgtaaaatgacattcattttgaaacaa 36447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 40805064 - 40805026
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  40805064 aagttgtattgtaaatgtaaagtgacatttattttaaaa 40805026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 42044093 - 42044127
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||||||||||||||||||||| |||||    
T  42044093 aagttgtattgaaaatgtaaagtgacattaatttt 42044127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 1103524 - 1103483
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  1103524 aagttgtattggaaatgtaaaatgacattcattttgaaacaa 1103483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 19906454 - 19906413
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||| |||||||||||| ||||||    
T  19906454 aagttgtattggaaatgtaaagcgacattcattttgaaacaa 19906413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30515013 - 30514972
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  30515013 aagttgtattggaaatgtaaattgacattcattttgaaacaa 30514972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 32345949 - 32345990
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  32345949 aagttgcattgaaaatgtaaagcgacattcattttgaaacaa 32345990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 34002171 - 34002208
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  34002171 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 34002208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 41906047 - 41906088
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||  ||||||||||||||||| ||||||||||||    
T  41906047 aagttgtattagaaatgtaaagtgacatttattttaaaacaa 41906088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 42121590 - 42121549
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||| |||||||||||||||||| ||||||    
T  42121590 aagttgtattggaaatataaagtgacattcattttgaaacaa 42121549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 42259661 - 42259702
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  42259661 aagttgtattgaaaacgtaaaataacattcattttaaaacaa 42259702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 17869355 - 17869327
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  17869355 aacttaaagttgcattgaaaattgtgtga 17869327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 19277080 - 19277108
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  19277080 aacttaaagttgcattgaaaattgtgtga 19277108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19906532 - 19906492
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  19906532 aacttaaagttgcattgaaaattgtgagagagaaaagttgg 19906492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 29001599 - 29001627
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  29001599 aacttaaagttgcattgaaaattgtgtga 29001627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 39117523 - 39117551
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  39117523 aacttaaagttgcattgaaaattgtgtga 39117551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 40298965 - 40298925
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||| |||||||||||||||||  ||||||||||    
T  40298965 aacttaaagttacattgaaaattgtgtgagagaaaagttgg 40298925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 38329089 - 38329184
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||| || |||||||  ||       || |||||||||||||||| |||||||||||||||||||||||||    
T  38329089 aacttaaagttgcattgaaaattgtgtgagggtaaagttgaaagaaaaaaattaaagttgtattgaaaatataaagtgacattcattttaaaacaa 38329184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 7129391 - 7129306
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||| |||||||||||  |||||||||| ||       || |||||| ||||||||||||||||||||||||||||    
T  7129391 ttaaagttgcattggaaattgtgtgagagaaaagttggaagaaaaaaattaaagttgcattgaaaatgtaaagtgacattcatttt 7129306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 7612535 - 7612496
Alignment:
Q  75 gttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7612535 gttgtattgaaaatgtaaagtgacattcattttaaaacaa 7612496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 8382591 - 8382629
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8382591 aagttgtattgaaaatgtaaagtgacattcattttaaaa 8382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 1774173 - 1774214
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1774173 aagttgtattgaaaatgtaaattgacattcattttaaaacaa 1774214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 11257581 - 11257540
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  11257581 aagttgtattaaaaatgtaaagtgacattcattttaaaacaa 11257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 36915406 - 36915365
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  36915406 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 36915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 8471376 - 8471279
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga-ag-gaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||       || |||||| |||| |||||||||| |||||||||||| ||||||    
T  8471376 aacttaaagttgcattgaaaattgtgtgagagagaaaagttggaagaaaaaaattaaagttgcattggaaatgtaaagcgacattcattttgaaacaa 8471279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 3095617 - 3095656
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaac 112  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  3095617 aagttgtattgaaaatgtaaagtaacattcattttaaaac 3095656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 16208989 - 16208955
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  16208989 aagttgtattgaaaatgtaaagtgacattcatttt 16208955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 32061540 - 32061578
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  32061540 ttgtatagaaaatgtaaagtgacattcattttaaaacaa 32061578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 34168319 - 34168353
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  34168319 aagttgtattgaaaatgtaaagtgacattcatttt 34168353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 9022434 - 9022393
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  9022434 aagttgtattggaaacgtaaagtgacattcattttaaaacaa 9022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 22601175 - 22601134
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  22601175 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 22601134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 42946161 - 42946120
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  42946161 aagttgtattaaaaatgtaaaatgacattcattttaaaacaa 42946120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 11336122 - 11336162
Alignment:
Q  74 agttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  11336122 agttgtattgaaaatgtaaaatgatattcattttaaaacaa 11336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 30788974 - 30788934
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  30788974 aagttgtattgaatatgtaaagtgacatttattttaaaaca 30788934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 8107273 - 8107304
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcat 104  Q
    ||||||||||||||||||||||||||||||||    
T  8107273 aagttgtattgaaaatgtaaagtgacattcat 8107304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 11257657 - 11257618
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttg 58  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  11257657 aacttaaagttgcattgaaaattgtgtgagagaaaagttg 11257618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 34461698 - 34461737
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaac 112  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  34461698 aagttgtattggaaatgtaaagtgacattcattttgaaac 34461737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 2803354 - 2803392
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  2803354 ttgtattgaaaatgtaaagtgacatttattttgaaacaa 2803392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 26439083 - 26439045
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  26439083 aacttaaagttgcattgaaaattgtgtgagagaaaagtt 26439045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 27416540 - 27416506
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||| |||||||||||||||||||||||    
T  27416540 aagttgtattggaaatgtaaagtgacattcatttt 27416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 32326839 - 32326873
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||||||||||||||||||||| |||||    
T  32326839 aagttgtattgaaaatgtaaagtgacatttatttt 32326873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 3203366 - 3203325
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||||||||||||||||||||| ||||| ||||||    
T  3203366 aagttgcattgaaaatgtaaagtgacatttattttgaaacaa 3203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 5588587 - 5588628
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  5588587 aagttgtattggaaatgtaaattgacattcagtttaaaacaa 5588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7612612 - 7612575
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  7612612 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 7612575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 14541859 - 14541900
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||  ||||||||||||||||||||||| ||||||    
T  14541859 aagttgtattagaaatgtaaagtgacattcattttgaaacaa 14541900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 27109934 - 27109975
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||    
T  27109934 aagttgtattggaaatggaaagtgacattcattttgaaacaa 27109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 29931345 - 29931386
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  29931345 aagttgtattggaaatgtaaagtgatatttattttaaaacaa 29931386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 35052510 - 35052469
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||  |||||||||||||||||||    
T  35052510 aagttgtattggaaatgtaaaacgacattcattttaaaacaa 35052469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 45187398 - 45187439
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  45187398 aagttgtattgaaaatataaagtgacatttattttgaaacaa 45187439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 8382513 - 8382553
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||| ||||||||||||||||||||||  ||||||||||    
T  8382513 aacttatagttgcattgaaaattgtgtgagagaaaagttgg 8382553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 34168247 - 34168275
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  34168247 aacttaaagttgcattgaaaattgtgtga 34168275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 34461617 - 34461645
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  34461617 aacttaaagttgcattgaaaattgtgtga 34461645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 50072368 - 50072276
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||   ||||||||| ||       || ||||||||||||||||||||||||||||||||||| ||||||    
T  50072368 ttaaagttgcattgaaaattgtgtgagaaaaaagttggaagaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 50072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 21045244 - 21045151
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnn-ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||  |||||||||| ||        || ||||||||||||||||||||||||||||||||||| ||||||    
T  21045244 ttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 21045151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 38692501 - 38692409
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||| ||  |||||||||| ||       || |||||  |||||||||||||||||||||||||||||||||||    
T  38692501 ttaaagttgcattgaaaattgtgcgagagaaaagttgggagaaaaaaattaaagtttaattgaaaatgtaaagtgacattcattttaaaacaa 38692409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 31941594 - 31941553
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31941594 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 31941553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 47321180 - 47321139
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  47321180 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 47321139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 51930687 - 51930595
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||  |||||||||| ||       || || |||||||| |||||||||| |||||||||||| ||||||    
T  51930687 ttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaattaaaattgtattggaaatgtaaagcgacattcattttgaaacaa 51930595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 32141028 - 32141119
Alignment:
Q  23 taaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||| ||||||||||||||||||||  |||||||||| ||       || ||||||||||| |||||||||||| |||||||||| ||||||    
T  32141028 taaatttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaattaaagttgtattggaaatgtaaagtggcattcattttgaaacaa 32141119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 45520573 - 45520611
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45520573 aagttgtattgaaaatgtaaagtgacattcattttaaaa 45520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 52732635 - 52732594
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  52732635 aagttgtattggaaatgtaaagtgacattcattttaaaacaa 52732594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 3093389 - 3093351
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  3093389 aagttatattgaaaatgtaaagtgacattcattttaaaa 3093351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 45903521 - 45903555
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  45903521 aagttgtattgaaaatgtaaagtgacattcatttt 45903555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 1868214 - 1868255
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  1868214 aagttgcattgaaaatgtaaagtgacattcattttgaaacaa 1868255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 15501261 - 15501302
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  15501261 aagttgtattggaaatgtaaagtgacattcattttcaaacaa 15501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 19282526 - 19282567
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  19282526 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 19282567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 29290003 - 29290044
Alignment:
Q  70 ttgaagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  29290003 ttgaagttgtattgaaaatataaagtgacattaattttaaaa 29290044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 29840111 - 29840070
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  29840111 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 29840070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 34124331 - 34124290
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  34124331 aagttgcattgaaaatgtaaagcgacattcattttaaaacaa 34124290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 37445696 - 37445655
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  37445696 aagttgtattaaaaatgtaaaatgacattcattttaaaacaa 37445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 39671144 - 39671238
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||  |||||||||  ||       || ||||||||||| |||||||||  |||||||||||| ||||||    
T  39671144 aacttaaagttgcattgaaaattgtgtgagagaaaagttgaaag-aaaaaattaaagttgtattggaaatgtaaaacgacattcattttgaaacaa 39671238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 56556369 - 56556410
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  56556369 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 56556410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 19849198 - 19849158
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  19849198 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 19849158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 30492764 - 30492732
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatt 105  Q
    |||||||||||||||||||||||||||||||||    
T  30492764 aagttgtattgaaaatgtaaagtgacattcatt 30492732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 31817241 - 31817331
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||  |||||||||| ||          |||||| |||| ||||||||||||||||||||||| ||||||    
T  31817241 ttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaa--aaagttgcattggaaatgtaaagtgacattcattttgaaacaa 31817331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 34360119 - 34360079
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  34360119 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 34360079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 55126533 - 55126494
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaac 112  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  55126533 aagttgtattgaaaatttaaaatgacattcattttaaaac 55126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 31987340 - 31987302
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  31987340 aagttgtattagaaatgtaaagtgacattcattttaaaa 31987302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 6232150 - 6232191
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  6232150 aagttgtattgaaaatgtaaattgacatttattttgaaacaa 6232191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6462045 - 6462004
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||| |||||||||||| ||||||    
T  6462045 aagttgtattggaaatgtaaagcgacattcattttgaaacaa 6462004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6510154 - 6510113
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  6510154 aagttgtattgaaaatataaagtgacatttattttgaaacaa 6510113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 19849120 - 19849079
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| || |||||||||| ||||||||||||||||    
T  19849120 aagttgtattggaattgtaaagtgaaattcattttaaaacaa 19849079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 22212377 - 22212336
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  22212377 aagttatattggaaatgtaaggtgacattcattttaaaacaa 22212336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 24259647 - 24259606
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| ||||||||||||||||||||||| ||||||    
T  24259647 aagttgcattggaaatgtaaagtgacattcattttgaaacaa 24259606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 35928527 - 35928486
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||    
T  35928527 aagttgtattgaaaatgtaaagtgatatttattttgaaacaa 35928486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 44855355 - 44855318
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  44855355 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 44855318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 45049823 - 45049786
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagt 56  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  45049823 aacttaaagttgcattgaaaattgtgcgaaagaaaagt 45049786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 52732702 - 52732665
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  52732702 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 52732665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 54091994 - 54091953
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| ||||| |||| ||||||||||||||||||||    
T  54091994 aagttgtattaaaaatctaaattgacattcattttaaaacaa 54091953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 11835219 - 11835191
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  11835219 aacttaaagttgcattgaaaattgtgtga 11835191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 24259727 - 24259699
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  24259727 aacttaaagttgcattgaaaattgtgtga 24259699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 45889679 - 45889651
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  45889679 aacttaaagttgcattgaaaattgtgtga 45889651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 54233932 - 54233904
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  54233932 aacttaaagttgcattgaaaattgtgtga 54233904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 34225867 - 34225771
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnn-ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||  |||||||||| ||        || ||||||||||||||||||||||||||||||||||| ||||||    
T  34225867 aacttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 34225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 4766250 - 4766341
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||||||||||||||||||  |||||||||| ||       || ||||||||||||||||||||| ||||||||||||| |||||    
T  4766250 ttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaattaaagttgtattgaaaatgtaaattgacattcattttgaaaca 4766341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 14378286 - 14378375
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||| || ||  |||||||||| ||       || |||||||||||||||||||||||||||||||||||||||    
T  14378286 ttaaagttgcattgaaaattatgcgagagaaaagttgggagaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttaaaa 14378375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 45372642 - 45372686
Alignment:
Q  70 ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45372642 ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 45372686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 33093407 - 33093366
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  33093407 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 33093366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 45148065 - 45148106
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  45148065 aagttttattgaaaatgtaaagtgacattcattttaaaacaa 45148106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 14698107 - 14698010
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga-ag-gaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||| |||||||||||||||| || |||||||||| ||       || |||||| ||||||||||||||| |||||||||||| ||||||    
T  14698107 aacttaaagttgtattgaaaattgtgtgagagagaaaagttggaagaaaaaaattaaagttgcattgaaaatgtaaagcgacattcattttgaaacaa 14698010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 7743440 - 7743401
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaac 112  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  7743440 aagttgtattggaaatgtaaagtgacattcattttaaaac 7743401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 24775225 - 24775187
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  24775225 ttgtattgaaaatgtaaagtgacaatcattttaaaacaa 24775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 4536613 - 4536572
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  4536613 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 4536572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 29795237 - 29795274
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  29795237 ttaaagttgcattgaaaattgtgtgaaagaaaagttgg 29795274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 29795303 - 29795344
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  29795303 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 29795344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 37106979 - 37106939
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  37106979 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 37106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 40987384 - 40987419
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttta 108  Q
    |||||||||||||||||||||| |||||||||||||    
T  40987384 aagttgtattgaaaatgtaaagcgacattcatttta 40987419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 4840840 - 4840874
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||| |||||||||||||||||||||||    
T  4840840 aagttgtattggaaatgtaaagtgacattcatttt 4840874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 775998 - 776039
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  775998 aagttgcattgaaaatgtaaagcgacattcattttgaaacaa 776039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 1360216 - 1360175
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||    
T  1360216 aagttgtattggaaatgcaaagtgacattcattttgaaacaa 1360175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 1381789 - 1381748
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||    
T  1381789 aagttatattggaaatgtaaagtaacattcattttaaaacaa 1381748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 2459812 - 2459771
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  2459812 aagttgcattggaaatgtaaagcgacattcattttaaaacaa 2459771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6592004 - 6591963
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||    
T  6592004 aagttgtattggaaatgtaaaatgatattcattttaaaacaa 6591963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 7743515 - 7743478
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  7743515 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 7743478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 10580971 - 10581012
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| |||||||| ||||||||| ||||||    
T  10580971 aagttgtattgaaaatataaagtgatattcattttgaaacaa 10581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 43344334 - 43344375
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| ||| |||||||||||||| ||||||    
T  43344334 aagttgtattgaaaatataaggtgacattcattttgaaacaa 43344375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 43388770 - 43388811
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  43388770 aagttgcattgaaaatgtaaagcgacattcattttgaaacaa 43388811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 2459892 - 2459864
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  2459892 aacttaaagttgcattgaaaattgtgtga 2459864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 33093487 - 33093459
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  33093487 aacttaaagttgcattgaaaattgtgtga 33093459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 24041059 - 24041155
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnn-ttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||  |||||||||| ||        || ||||||||||||||||||||||||||||||||||| ||||||    
T  24041059 aacttaaagttgcattgaaaattgtgtgagagaaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 24041155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 84553 - 84648
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||| ||  ||||| |||| ||       || ||||||||||| ||||||||||||||||||||||||||||||    
T  84553 aacttaaagttgcattgaaaattgtgcgagagaaaaattggaagaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 84648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 38132226 - 38132322
Alignment:
Q  20 acttaaagttgcattgaaaattgtgtga--aggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||  | |||||||||| ||       || ||||||||||| ||||||||||||||||||||||| ||||||    
T  38132226 acttaaagttgcattgaaaattgtgtgagaaagaaaagttggaagaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 38132322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 1430572 - 1430666
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||||||||| ||||||||||   |||||||||| ||       || ||||||||||  ||||||||||||||||||||||| |||||    
T  1430572 aacttaaagttgcattggaaattgtgtgtgagaaaagttggaagaaaaaaattaaagttgtattagaaatgtaaagtgacattcattttgaaaca 1430666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 10690990 - 10691080
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaa 109  Q
    |||||||||||||||||||||||||||||   ||||||||  ||       ||  |||||||||||||||||||||||||||||| |||||    
T  10690990 aacttaaagttgcattgaaaattgtgtgagataaaagttgaaagaaaaaaattatagttgtattgaaaatgtaaagtgacattcagtttaa 10691080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 11650097 - 11650056
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  11650097 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 11650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 43738367 - 43738408
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  43738367 aagttgtattgaaaatgtgaagtgacattcattttaaaacaa 43738408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 15647177 - 15647215
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15647177 ttgtattgaaaatgtaaagtgacattcattttgaaacaa 15647215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 40061010 - 40061044
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  40061010 aagttgtattgaaaatgtaaagtgacattcatttt 40061044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 43105694 - 43105732
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  43105694 aagttgtattgaaaatgtaaggtgacattcattttaaaa 43105732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 43755145 - 43755058
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||||  |||||||||||||||  |||||||||| ||       || |||||||||||||||||||||||||| ||||||||    
T  43755145 aacttaaagttgttttgaaaattgtgtgagagaaaagttggaagaaaaaa-ttaaagttgtattgaaaatgtaaagtgacgttcatttt 43755058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 48259898 - 48259936
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  48259898 aacttaaagttgcattgaaaattgtgtgaaagaaaagtt 48259936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 50158420 - 50158454
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  50158420 aagttgtattgaaaatgtaaagtgacattcatttt 50158454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 5317690 - 5317731
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  5317690 aagttgtattgaaattgtaaagtgacattcattttgaaacaa 5317731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6332205 - 6332164
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||| || |||||||||||||||||||||||||||||||    
T  6332205 aagttgtgttaaaaatgtaaagtgacattcattttaaaacaa 6332164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 9552443 - 9552484
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  9552443 aagttgtattggaaatgtaaaatgacattcattttaaaacaa 9552484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 12002285 - 12002244
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  12002285 aagttgtattggaaatgtaaaatgacattcattttaaaacaa 12002244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 15698864 - 15698905
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  15698864 aagttgtattggaaatataaagtgacattcattttaaaacaa 15698905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 26252157 - 26252116
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  26252157 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 26252116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 44583811 - 44583770
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  44583811 aagttgtattaaaaatgtaaggtgacattcattttaaaacaa 44583770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 48259967 - 48260008
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  48259967 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 48260008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 1428905 - 1428865
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  1428905 aagttgtattagaaatgtaaagtgacattcattttaaaaca 1428865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 2245825 - 2245789
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaa 109  Q
    |||||||||||||||||||| ||||||||||||||||    
T  2245825 aagttgtattgaaaatgtaaggtgacattcattttaa 2245789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 11134574 - 11134614
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  11134574 aagttgcattgaaaatgtaaagtgacattcattttgaaaca 11134614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 22664976 - 22664937
Alignment:
Q  75 gttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  22664976 gttgtattggaaatgtaaagtgacattcattttgaaacaa 22664937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 45377263 - 45377297
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    ||||||||||| |||||||||||||||||||||||    
T  45377263 aagttgtattggaaatgtaaagtgacattcatttt 45377297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 50349898 - 50349936
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  50349898 aacttaaagttgcattgaaaattgtgtgagagaaaagtt 50349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 2459047 - 2459006
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  2459047 aagttgcattgaaaatgtaaagcgacattcattttgaaacaa 2459006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 12851780 - 12851739
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||    
T  12851780 aagttctattggaaatgtaaagtgacattcattttgaaacaa 12851739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 17806488 - 17806529
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  17806488 aagttgtattggaaatgtaaagcgacactcattttaaaacaa 17806529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 26582964 - 26582923
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  26582964 aagttgtattggaaatgtaaagtaacatttattttaaaacaa 26582923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 52403515 - 52403482
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattt 106  Q
    |||||||||||||||| |||||||||||||||||    
T  52403515 aagttgtattgaaaatttaaagtgacattcattt 52403482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 254946 - 254974
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  254946 aacttaaagttgcattgaaaattgtgtga 254974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 6377396 - 6377428
Alignment:
Q  79 tattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||||||||| |||||||||||||||    
T  6377396 tattgaaaatgtaaagtaacattcattttaaaa 6377428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 12002363 - 12002335
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  12002363 aacttaaagttgcattgaaaattgtgtga 12002335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 17919855 - 17919883
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  17919855 aacttaaagttgcattgaaaattgtgtga 17919883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 26252237 - 26252209
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  26252237 aacttaaagttgcattgaaaattgtgtga 26252209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 28751521 - 28751549
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacatt 101  Q
    |||||||||||||||||||||||||||||    
T  28751521 aagttgtattgaaaatgtaaagtgacatt 28751549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 37437439 - 37437467
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  37437439 aacttaaagttgcattgaaaattgtgtga 37437467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 53716120 - 53716029
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    |||||||||||||||||| |||||||  |||||||||| ||       || ||||||||||| ||||||||||| |||||||||||||||||    
T  53716120 ttaaagttgcattgaaaactgtgtgagagaaaagttggaagaaaaaaattaaagttgtattggaaatgtaaagtaacattcattttaaaaca 53716029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 19552580 - 19552539
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19552580 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 19552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 1341033 - 1341071
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1341033 aagttgtattgaaaatgtaaagtgacattcattttaaaa 1341071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 45095593 - 45095555
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45095593 aagttgtattgaaaatgtaaagtgacattcattttaaaa 45095555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 2568116 - 2568157
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2568116 aagttgtattgaaaatgtaaagtaacattcattttaaaacaa 2568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 3000792 - 3000751
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  3000792 aagttgtattgaaaatgtaaagtaacattcattttaaaacaa 3000751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 26965612 - 26965653
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  26965612 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 26965653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 32304018 - 32304059
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  32304018 aagttgtattgaaaatgtaaagtgacattcatttcaaaacaa 32304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 34059916 - 34059875
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  34059916 aagttgtattgaaaatgtaaaatgacattcattttaaaacaa 34059875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 36771680 - 36771721
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  36771680 aagttgtattgtaaatgtaaagtgacattcattttaaaacaa 36771721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 44648514 - 44648555
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  44648514 aagttgtattggaaatgtaaagtgacattcattttaaaacaa 44648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 46363124 - 46363165
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  46363124 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 46363165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 790187 - 790095
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||| |||||||||||  |||||||| | ||       || ||||||||||| ||||||||||||||||| ||||| ||||||    
T  790187 ttaaagttgcattggaaattgtgtgagagaaaagtttgaagaaaaaaattaaagttgtattggaaatgtaaagtgacattaattttgaaacaa 790095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 25722574 - 25722608
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  25722574 aagttgtattgaaaatgtaaagtgacattcatttt 25722608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 35239479 - 35239392
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||       || ||||||||||  |||||||||||||||||||||||    
T  35239479 aacttaaagttgcagtgaaaattgtgtgagagaaaagttggaag-aaaaaattaaagttgtattagaaatgtaaagtgacattcatttt 35239392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 83336 - 83295
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  83336 aagttgtattgaaaatgtaaaatgacattcattttgaaacaa 83295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 25061744 - 25061703
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  25061744 aagttgtattggaaatgtaaagtggcattcattttaaaacaa 25061703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 37225708 - 37225749
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  37225708 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 37225749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 43580515 - 43580474
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  43580515 aagttgtattgaaaatgtaaagtgacatttattttgaaacaa 43580474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 1340964 - 1341004
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  1340964 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 1341004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 27483297 - 27483337
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  27483297 aagttgtattggaaatgtaaagtgacattcattttgaaaca 27483337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 36771611 - 36771651
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  36771611 aacttaaagttgcattgaaaattgtgtgagagaaaagttgg 36771651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 52202364 - 52202445
Alignment:
Q  33 ttgaaaattgtgtgaaggaaaagttggtagnnnnnnnttgaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||  |||||||||| ||       || ||||||||||||||||| |||  |||||||||||||||||||    
T  52202364 ttgaaaattgtgtgagagaaaagttggaagaaaaaaattaaagttgtattgaaaatgcaaaacgacattcattttaaaacaa 52202445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 2988725 - 2988763
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  2988725 ttgtattggaaatgtaaagtgacattcattttgaaacaa 2988763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 41287116 - 41287078
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaa 111  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  41287116 aagttgtattggaaatgtaaagtgacatccattttaaaa 41287078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Complemental strand, 44854352 - 44854314
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  44854352 ttgtattgaaaatgtaaagtgacgttcattttgaaacaa 44854314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 3000868 - 3000831
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  3000868 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 3000831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 5244626 - 5244585
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  5244626 aagttatattaaaaatgtaaggtgacattcattttaaaacaa 5244585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 13485918 - 13485959
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  13485918 aagttgtattggaaatgtaaattgacattcattttgaaacaa 13485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 15514839 - 15514880
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||| |||| |||||||    
T  15514839 aagttgtattggaaatgtaaagtgacatttatttgaaaacaa 15514880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 20512610 - 20512651
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| ||||||||||||||| |||||||||||| ||||||    
T  20512610 aagttgcattgaaaatgtaaagcgacattcattttgaaacaa 20512651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 22730965 - 22730924
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  22730965 aagttgtattggaaatgtaaattgacattcagtttaaaacaa 22730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 26965546 - 26965583
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  26965546 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 26965583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 27027848 - 27027811
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  27027848 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 27027811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 43169374 - 43169333
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  43169374 aagttgtattggaaatgtaaaatgacattcattttgaaacaa 43169333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 49470829 - 49470788
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  49470829 aagttgtattgaaaatgtaaaacgacattcattttgaaacaa 49470788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 51381761 - 51381720
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||    
T  51381761 aagttgtattgtaaatgtaaagtgacatttattttgaaacaa 51381720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 54933318 - 54933359
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| ||||||||||||||||||||||| ||||||    
T  54933318 aagttgcattggaaatgtaaagtgacattcattttgaaacaa 54933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 2568047 - 2568075
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  2568047 aacttaaagttgcattgaaaattgtgtga 2568075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4392022 - 4391982
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  4392022 aacttaaagttgcattgaaaattgtgcgagagaaaagttgg 4391982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 16240694 - 16240654
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||||||||||||| ||  ||||||||||    
T  16240694 aacttaaagttgcattgaaaattgtgcgagagaaaagttgg 16240654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 25061813 - 25061773
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  25061813 aacttaaagttgcattgaaaattgtatgagagaaaagttgg 25061773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 25722494 - 25722522
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  25722494 aacttaaagttgcattgaaaattgtgtga 25722522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 27483228 - 27483268
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||| |||||  ||||||||||    
T  27483228 aacttaaagttgcattgaaaattatgtgagagaaaagttgg 27483268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 38457500 - 38457460
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    ||||||||||||||||||||| ||| ||||||||| |||||    
T  38457500 aagttgtattgaaaatgtaaaatgatattcattttgaaaca 38457460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 38457578 - 38457538
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  38457578 aacttaaaattgcattgaaaattgtgtgagagaaaagttgg 38457538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 41287196 - 41287168
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  41287196 aacttaaagttgcattgaaaattgtgtga 41287168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 43599865 - 43599905
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  43599865 aacttaaagttgcattaaaaattgtgtgagagaaaagttgg 43599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 51381844 - 51381816
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  51381844 aacttaaagttgcattgaaaattgtgtga 51381816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 54933238 - 54933266
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  54933238 aacttaaagttgcattgaaaattgtgtga 54933266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 1924777 - 1924818
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  1924777 aagttgtattgaaaatgtaaaatgacattcattttaaaacaa 1924818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 4132088 - 4132129
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  4132088 aagttgtattaaaaatgtaaagtgacattcattttaaaacaa 4132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 32258761 - 32258720
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  32258761 aagttgtattgaaaatgtaaagtgacattcattttgaaacaa 32258720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 3015955 - 3015921
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcatttt 107  Q
    |||||||||||||||||||||||||||||||||||    
T  3015955 aagttgtattgaaaatgtaaagtgacattcatttt 3015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 4123968 - 4124009
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  4123968 aagttgtattaaaaatgtaaagtgacattcattttgaaacaa 4124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 29915580 - 29915539
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  29915580 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 29915539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 29927246 - 29927205
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  29927246 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 29927205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 31275755 - 31275796
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||||||||||||| ||||||    
T  31275755 aagttgtattggaaatgtaaagtgacattcattttgaaacaa 31275796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 1924712 - 1924749
Alignment:
Q  22 ttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  1924712 ttaaagttgcattgaaaattgtgtgagagaaaagttgg 1924749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6140639 - 6140598
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| |||||||||| |||||||||||||||||||    
T  6140639 aagttgaattggaaatgtaaagcgacattcattttaaaacaa 6140598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 6143123 - 6143082
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| ||||||||| ||||||||||||||||||||    
T  6143123 aagttgaattggaaatgtaaaatgacattcattttaaaacaa 6143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 8052384 - 8052343
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||  |||| |||||||||||||||||||||||||    
T  8052384 aagttgtattagaaatataaagtgacattcattttaaaacaa 8052343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 10494875 - 10494916
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||| ||||||||| ||||||||||||||||||||    
T  10494875 aagttgaattggaaatgtaaactgacattcattttaaaacaa 10494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 12828718 - 12828755
Alignment:
Q  21 cttaaagttgcattgaaaattgtgtgaaggaaaagttg 58  Q
    |||||||||||||||||||||||||||  |||||||||    
T  12828718 cttaaagttgcattgaaaattgtgtgagagaaaagttg 12828755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 12828794 - 12828835
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||    
T  12828794 aagttgtattggaaatgtaaagtgaaattcattttgaaacaa 12828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 17345249 - 17345290
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  17345249 aagttgtattagaaatgtaaagtgatattcattttaaaacaa 17345290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 19689947 - 19689988
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||  ||||||||||| ||||||||||||||||||    
T  19689947 aagttgtattagaaatgtaaagtaacattcattttaaaacaa 19689988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 30627130 - 30627089
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  30627130 aagttgtattgaaaatataaagtgacatttattttgaaacaa 30627089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 34439526 - 34439567
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
T  34439526 aagttgtattggaaatgtaaaatgacattcattttgaaacaa 34439567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 34576583 - 34576542
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||    
T  34576583 aagttgtattggaaatgtaaaatgatattcattttaaaacaa 34576542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4123891 - 4123930
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  4123891 aacttaaa-ttgcattgaaaattgtgtgaaagaaaagttgg 4123930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4131981 - 4132020
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttgg 59  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  4131981 aacttaaa-ttgcattgaaaattgtgtgaaagaaaagttgg 4132020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 23936695 - 23936735
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaaca 113  Q
    |||||| |||||||||||||||| ||||||||||| |||||    
T  23936695 aagttgcattgaaaatgtaaagtaacattcattttgaaaca 23936735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 31275676 - 31275704
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  31275676 aacttaaagttgcattgaaaattgtgtga 31275704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 34576663 - 34576635
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  34576663 aacttaaagttgcattgaaaattgtgtga 34576635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 7812 - 7852
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  7812 aagttgtatt-aaaatgtaaagtgacattcattttaaaacaa 7852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 7735 - 7774
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagttg 58  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  7735 aacttaaagttgcattgaaaattgtgtgagagaaaagttg 7774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 8197 - 8156
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  8197 aagttgtattgaaaatgtaaattgacattcattttgaaacaa 8156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 70568 - 70609
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  70568 aagttgcattgaaaatgtaaagtgacattcattttgaaacaa 70609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 321765 - 321724
Alignment:
Q  73 aagttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  321765 aagttgtattggaaatgtaaagcgacattcattttaaaacaa 321724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 13175 - 13213
Alignment:
Q  76 ttgtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  13175 ttgtattggaaatgtaaagtgacgttcattttaaaacaa 13213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 12116 - 12154
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtgaaggaaaagtt 57  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  12116 aacttaaagttgcattgaaaattgtgtgagagaaaagtt 12154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 10074 - 10110
Alignment:
Q  78 gtattgaaaatgtaaagtgacattcattttaaaacaa 114  Q
    |||||||||||  ||||||||||||||||||||||||    
T  10074 gtattgaaaattgaaagtgacattcattttaaaacaa 10110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 16074 - 16102
Alignment:
Q  19 aacttaaagttgcattgaaaattgtgtga 47  Q
    |||||||||||||||||||||||||||||    
T  16074 aacttaaagttgcattgaaaattgtgtga 16102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University