View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_79 (Length: 278)
Name: NF1705_low_79
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 17813363 - 17813110
Alignment:
| Q |
14 |
attaccaatatcattcattataaatatatagatattttgattattacgttttgtcctataacgttattttttaagttaattaaccnnnnnnnngtagggc |
113 |
Q |
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| T |
17813363 |
attaccaatatcattcattataaatatatagatattttgattattacgttttgtcctataacgttattttttaagttaattaaccttttttt-gtagggc |
17813265 |
T |
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| Q |
114 |
attaagtggaggtttaagcctaccccagaaatgcagttaagtcctttagaagtccaagtttttgcatatgtgtttcatccagatcaggatgcagagtatt |
213 |
Q |
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| T |
17813264 |
attaagtggaggtttaagcctaccccagaaatgcagttaagtcctttagaagtccaagtttgtgcatatgtgtttcatccagatcaggatgcagagtatt |
17813165 |
T |
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| Q |
214 |
gttcttactttaactacattcacttattgctattgtaaaaaataatacctgacct |
268 |
Q |
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| T |
17813164 |
gttcttactttaagtacattcacttattgctattgtaaaaaataatagctgacct |
17813110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 9417887 - 9417644
Alignment:
| Q |
14 |
attaccaatatcattcattataaatatatagatattttgattattacgttttgtcctataacgttattttttaagttaattaaccnnnnnnnn---gtag |
110 |
Q |
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| T |
9417887 |
attaccaatatcactcaatataaatatatagatattttgattattatgttctgtcctataacattatttttgaagtta-ttaacctttttttttttgtag |
9417789 |
T |
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| Q |
111 |
ggcattaagtggaggtttaagcctaccccagaaatgcagttaagtcctttagaagtccaagtttttgcatatgtgtttcatccagatcaggatgcagagt |
210 |
Q |
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| T |
9417788 |
ggaattaagtggaggtttaagcctaccccagaaatgcacttgagtcctttagaagttcaagtttgtgcatatgtgtttcatccagatcaggatgcagagt |
9417689 |
T |
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| Q |
211 |
attgttcttactttaactacattcacttattgctattgtaaaaaa |
255 |
Q |
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| T |
9417688 |
attgttcttactttaagtacattcacttattgttatggtaaaaaa |
9417644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 12003694 - 12003913
Alignment:
| Q |
14 |
attaccaatatcattcattataaatatatagatattttgattattacgttttgtcctataacgttattttttaagttaattaaccnnnnnnnngtagggc |
113 |
Q |
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|||| |||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
12003694 |
attatcaatatcactcaatataaatatatagatattttgattattatgttctgtcctataacgttatttttgaagttaattaac-ttttttttgtagggc |
12003792 |
T |
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| Q |
114 |
attaagtggaggtttaagcctaccccagaaatgcagttaagtcctttagaagtccaagtttttgcatatgtgtttcatccagatcaggatgcagagtatt |
213 |
Q |
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| T |
12003793 |
attaagtgaaggtttaagcctaccccagaaatgca---------------------agtttgtgcatatgtgtttcatctagatcaggatgcagagtatt |
12003871 |
T |
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| Q |
214 |
gttcttactttaactacattcacttattgctattgtaaaaaa |
255 |
Q |
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| T |
12003872 |
gttcttactttaagtacattcacttattgttatggtaaaaaa |
12003913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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