View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_8 (Length: 577)
Name: NF1705_low_8
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 195 - 544
Target Start/End: Complemental strand, 7547408 - 7547059
Alignment:
| Q |
195 |
atagcacgtaaactgtgacggaaatgtctacaaagcggataaacctgctctaagattgtgccaatgttcctctttgaaaattctgtgtaagacgacaata |
294 |
Q |
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| T |
7547408 |
atagcacgtaaattatgacggaaatgtctacaaagcggctaaacctgctctaagattgtgccaatgttcgtctttgaaaattcagtgttagacgacaata |
7547309 |
T |
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| Q |
295 |
ggctgtataataagcttggagaatcaactctctcaccaacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaatagga |
394 |
Q |
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| T |
7547308 |
ggctgtataataagcttggagaatcaactctctcaccaacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaatagga |
7547209 |
T |
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| Q |
395 |
agaaacaaacttaaaactgtaacatgctgaatacaaaaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagc |
494 |
Q |
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| T |
7547208 |
agaaacaaacttaaaactgtaacatgctgaatacaaaaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagc |
7547109 |
T |
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| Q |
495 |
ttctcaaacagatcgttagcactcgaccagtttttaagggtgtcaatcaa |
544 |
Q |
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| T |
7547108 |
ttctcaaacagatcgttagcactcgaccagtttttaagggtgtcaatcaa |
7547059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 7547564 - 7547454
Alignment:
| Q |
19 |
tgtttggcgtgatatatatcttttgaaggaggatgtttgtgattttcatttgcattttctgacaaaattctgggcagtaatcagtcatctcctcttatgc |
118 |
Q |
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| T |
7547564 |
tgtttggcgtgatatatatcttttgaaggaggatgtttgtgattttcatttgcattttctgacaaaattctgggcagtaatcagtcatctcctcgtatgc |
7547465 |
T |
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| Q |
119 |
agtaagctcct |
129 |
Q |
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| T |
7547464 |
agtaagctcct |
7547454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 214 - 533
Target Start/End: Complemental strand, 1128608 - 1128294
Alignment:
| Q |
214 |
ggaaatgtctacaaagcggataaacctgctctaagattgtgccaatgttcctctttgaaaattctgtgtaagacgacaataggctgtataataagcttgg |
313 |
Q |
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|||||||||||| |||| | | |||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||| |||||||| ||| || |
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| T |
1128608 |
ggaaatgtctacgaagcagctgaacctgctctaagattgtgccaatgttcctctttgacaattctttagaagataacaatagactgtataa---gctagg |
1128512 |
T |
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| Q |
314 |
agaatcaactctctcaccaacatcctgaaaacgtttgcattctttctacatgcatatagtatgatatcataatcaataggaagaaacaaacttaaaactg |
413 |
Q |
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| T |
1128511 |
agaatcaacactcccatcaacatccttaacacgctggcattctatctacatgcatacaatatgatataataatcaataggaggaagaaaacttaaaa-tg |
1128413 |
T |
|
| Q |
414 |
taacatgctgaatacaaaaattaaatgctttgtaatgctaccttcacccacatcttcaacacaggtataggaactggaagcttctcaaacagatcgttag |
513 |
Q |
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|||| || | ||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| |||||||||||| |||| ||| |||| |
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| T |
1128412 |
taacctgttaaatacaaaaattaaatgcttt-taaagctaccttcacccattgcttcaccacaggtataggagttggaagcttctcgaacatatctttag |
1128314 |
T |
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| Q |
514 |
cactcgaccagtttttaagg |
533 |
Q |
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|| | ||||||||||||||| |
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| T |
1128313 |
caatggaccagtttttaagg |
1128294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 1128815 - 1128707
Alignment:
| Q |
21 |
tttggcgtgatatatatcttttgaaggaggatgtttgtgattttcatttgcattttctgacaaaattctgggcagtaatcagtcatctcctcttatgcag |
120 |
Q |
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||||||||||||||||| ||||||||||| || || ||||||| ||||||||||||||||| || |||||| |||||| | ||||| ||| || ||| |
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| T |
1128815 |
tttggcgtgatatatatattttgaaggagtatattcgtgatttcgatttgcattttctgacagaactctgggtagtaataactcatcaactcgtactcag |
1128716 |
T |
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| Q |
121 |
taagctcct |
129 |
Q |
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||||||||| |
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| T |
1128715 |
taagctcct |
1128707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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