View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1705_low_81 (Length: 272)
Name: NF1705_low_81
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2516058 - 2516315
Alignment:
| Q |
1 |
tggtataaagacagctaaactttctagaaaggatttgaaaaaattgacaacataacaatacataggaaaaacaaatgctttctattcacgagcaacaaca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516058 |
tggtataaagacagctaaactttctagaaaagatttgaaaaaattgacaacataacaaaacataggaaaaacaaatgctttctattcacgagcaacaaca |
2516157 |
T |
|
| Q |
101 |
accacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttccacatacacaaccctac |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516158 |
accacttgtttaccaacattgcgaccgctaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttccacatacacaaccctac |
2516257 |
T |
|
| Q |
201 |
cttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataatt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516258 |
cttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataatt |
2516315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2496484 - 2496721
Alignment:
| Q |
1 |
tggtataaagacagctaaactttctagaaaggatttgaaaa-aattgacaacataacaatacataggaaaaacaaatgctttctattcacgagcaacaac |
99 |
Q |
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||||| ||||||| |||||| ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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| T |
2496484 |
tggtacaaagacaactaaacattctataaaagatttgaaaaaaattgacaacataacaatacataggaaaagcaaatgctttctattcccgagcaacgac |
2496583 |
T |
|
| Q |
100 |
aaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttccacatacacaacccta |
199 |
Q |
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| T |
2496584 |
aaccacttgtttaccaacattgcgaccactatataggccaatcaaggctgcagggccattctcaagaccctcagttatgtcttcaacatacacaatcttc |
2496683 |
T |
|
| Q |
200 |
ccttctcttatatgaggcaggacaaactctaagaattt |
237 |
Q |
| |
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|| ||||| |||||||| ||||||||||| || ||||| |
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| T |
2496684 |
ccatctctgatatgagggaggacaaactccaacaattt |
2496721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 2511870 - 2512043
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
183 |
Q |
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|
|||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2511870 |
attcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaaccaaagctgcaggacctttctcaagaccctcagctatgtcttc |
2511969 |
T |
|
| Q |
184 |
cacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataat |
257 |
Q |
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|
| T |
2511970 |
cacatacacaaccttcccttctctgatatgaggcaggacgaagtctaagaacttggcatatagatgatagtaat |
2512043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 2436214 - 2436061
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||| | | ||||| ||| || |||||||| |||||||||||||||||||||||||| |
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| T |
2436214 |
attcatgagcaacagcaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttc |
2436115 |
T |
|
| Q |
184 |
cacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaattt |
237 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||||||||||||| |||||||| |
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|
| T |
2436114 |
cacatacacaacctttccttctcttataagaggcaggacaaactccaagaattt |
2436061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 2505249 - 2505422
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2505249 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatatgccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
2505348 |
T |
|
| Q |
184 |
cacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgataataat |
257 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |
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|
| T |
2505349 |
tacatacacaaccttcccttctctgatatgaggcaggacaaactccaagaattttccgtatagatgatagtaat |
2505422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 2429865 - 2429703
Alignment:
| Q |
90 |
gagcaacaacaaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttccacata |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
2429865 |
gagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtcttccacata |
2429766 |
T |
|
| Q |
190 |
cacaaccctaccttctcttatatgaggcaggacaaactctaagaatttggtgtatagatgata |
252 |
Q |
| |
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||||||| | |||||||||||| ||||||| | |||||| |||||||| || || |||||||| |
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|
| T |
2429765 |
cacaacctttccttctcttataagaggcagcataaactccaagaattttgtataaagatgata |
2429703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 2432853 - 2432700
Alignment:
| Q |
84 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccactaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
183 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| | | ||||| ||| || |||||||| |||||||||||||||||||||||||| |
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| T |
2432853 |
attcatgagcaacaacaaccacttgtttaccaacattgcgaccactgtataggccaatcaatgcagcaggaccattctcaagaccctcagctatgtcttc |
2432754 |
T |
|
| Q |
184 |
cacatacacaaccctaccttctcttatatgaggcaggacaaactctaagaattt |
237 |
Q |
| |
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||||||||||| | | |||||||||||| ||||||||||||| || |||||||| |
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|
| T |
2432753 |
cacatacacaatctttccttctcttataagaggcaggacaaattccaagaattt |
2432700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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