View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1705_low_86 (Length: 261)

Name: NF1705_low_86
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1705_low_86
NF1705_low_86
[»] chr3 (2 HSPs)
chr3 (1-251)||(32424631-32424881)
chr3 (89-251)||(32450766-32450928)
[»] chr8 (1 HSPs)
chr8 (38-99)||(42678502-42678563)
[»] chr4 (1 HSPs)
chr4 (38-87)||(6986780-6986829)
[»] chr2 (1 HSPs)
chr2 (9-58)||(35226332-35226381)
[»] chr6 (1 HSPs)
chr6 (38-78)||(12117162-12117202)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32424631 - 32424881
Alignment:
Q  1 agtttttgttatatttatgaactatatactaaatttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32424631 agtttttgttatatttatgaactatatactaaatttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcac 32424730  T
Q  101 atgaacaacagagtctcgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacg 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32424731 atgaacaacagagtcccgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacg 32424830  T
Q  201 ttgaaccctctagctgaattattgttagctgctgctgttttttctcctatg 251  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  32424831 ttgaatcctctagctgaattattgttagcagctgctgttttttctcctatg 32424881  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 32450766 - 32450928
Alignment:
Q  89 aacataactcacatgaacaacagagtctcgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg 188  Q
    ||||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||   ||||||||||| |||||| |||||||||||    
T  32450766 aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg 32450865  T
Q  189 tcatcaatcacgttgaaccctctagctgaattattgttagctgctgctgttttttctcctatg 251  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  32450866 tcatcaatcacgttgaatcctctagctgaattattgttagctgctgctgttttctctcctatg 32450928  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 42678502 - 42678563
Alignment:
Q  38 attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactca 99  Q
    |||||| |||| | ||||||||||| |||||||||||| || |||||||| |||||||||||    
T  42678502 attaactatctgatttgtttttgaaatttgatgtcaaaattgtgtcaaaataacataactca 42678563  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 6986780 - 6986829
Alignment:
Q  38 attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaa 87  Q
    |||||||||||||||| |||| ||| |||| |||| ||||||||||||||    
T  6986780 attaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaa 6986829  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 35226332 - 35226381
Alignment:
Q  9 ttatatttatgaactatatactaaatttgattaaccatctaaattgtttt 58  Q
    |||||||||| ||||||  ||| || ||||||||||||||||||||||||    
T  35226332 ttatatttattaactatcaactgaacttgattaaccatctaaattgtttt 35226381  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 12117162 - 12117202
Alignment:
Q  38 attaaccatctaaattgtttttgaattttgatgtcaaattt 78  Q
    ||||||||| ||||||||| ||||| |||||||||||||||    
T  12117162 attaaccatataaattgttgttgaagtttgatgtcaaattt 12117202  T

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