View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1705_low_88 (Length: 258)
Name: NF1705_low_88
Description: NF1705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1705_low_88 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38741427 - 38741667
Alignment:
| Q |
1 |
ctaagaaattaaaatatctattttttcttgccatctcaataactattccatcattatcaatgatattatgtgcttaaatcagtcatgtacttgtaataaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38741427 |
ctaagaaattaaa-tatctattttttcttgccatctcaataactattccatcattatcaatgatattatgtgcttaaatcagtcatgtacttgtaataaa |
38741525 |
T |
|
| Q |
101 |
tnnnnnnnntcagtcatgtactcattaccnnnnnnnnnttgtgccccaaaaatcccattggtttattaattgtacatttcatgttgcacatagatgtaaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38741526 |
-ataaaaaatcagtcatgtactcattaccaaaaaaaaattgtgccccaaaaatcccattggtttattaattgtacatttcatgttgcacataaatgtaaa |
38741624 |
T |
|
| Q |
201 |
caagtatatactatgaaaacacacgaaaagtgacttttctaag |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38741625 |
caagtatatactatgaaaacacacgaaaagtgacttttttaag |
38741667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 51006085 - 51005993
Alignment:
| Q |
154 |
cccattggtttattaattgtacatttcatgttgcacatagatgtaaacaag------tatatactatgaaaacacacgaaaagtgacttttctaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
51006085 |
cccattggtttattaattgtacatttcatgttg--catagacgcaaacaagccaagaagtatattatgaaaacacatgaaaagtgacttttctaa |
51005993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University